current user: public




2011.Jan.03.22504.0
Query: PF00083.17; STP1_ARATH/26-489; Sugar (and other) transporter (submitted on 2011.Jan.03, from 10.1.46.41, by public)

Results of FFAS03 search in PDB0610
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWLast
1 -25.5003o7p_A mol:protein length:438 L-fucose-proton symporter  ali model follow..  12  29..ALLCSLFFLWAVANNLNDILLP--------------------QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFASFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII-----VAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVE--EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTI--IGGGIVTPVMGFVSDAAGIPTAELIPALCFAVIFIFARFRSQTATN......... 438
2 -25.2001pw4_A mol:protein length:451 Glycerol-3-phosphate transporter  ali model follow..  13  58..................................................GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL--FLLGMAWFNDWHAALYMPAFCAILVAL-FAMMRDTPQ----------------SCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAAIVGYTVDFFGWDGFMVMIGGSILAVILLIVVMIGEK........... 438
3 -19.4002gfp_A mol:protein length:375 Multidrug resistance protein D  ali model follow..  12  12....................GQMAQTIYIPAIAD-----------MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG---GLLDTMWNWRACYLFLLVLCAGVTFSMARMPET---------------------------------RPVDAPRTRLLTSYKTLFGN----SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGV-------------MNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPL................ 375
4 -18.3001pv6_A mol:protein length:417 Lactose permease  ali model follow..  12  35..............................................HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL---FFAKTDAPS-------------------------SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----------------TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL-NMYESIGFQAYLVLGLVALGFTLISVFTLSGPGPLSLLR..... 410
5 -16.2002xut_A mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN  ali model follow..  16.........YIIASEACERFSFYGMRNILTPF--------MTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFGKYNTILWLSLIYCVGAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQSNKSLAQKAFDMFYFTINFGSFFASLS---MPLLLKNFGAAVAFG---IPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGLVLFALVTPFWSLFDQKASTWFEPAMMQALNPLLVMLLIPFNNFV-ERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQMFFFAGFAILAAIVFALYARSYQ........... 507
6 -6.2901ujv_A mol:protein length:96 MEMBRANE ASSOCIATED GUANYLATE KINASE INVERTED  ali model follow..  14  1.................................................................................................GSSGSSGQAELMTLTIVKGAQGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQ................................................................................................................................................................................................................................................................................................................ 63
7 -5.7703lx7_A mol:protein length:174 SAGA-associated factor 29 homolog  ali model follow..  14  3............................................................................................................................SGRENLYFQGGDKPPPLCGAIPASGDYVARPGDKVAARVK----AVDGDEQW------------ILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYP----------------------QTTCFYRALIHAPPQRPQDDYSV....................................................................................................................................................................... 137
8 -5.2402fck_A mol:protein length:181 ribosomal-protein-serine acetyltransferase, p  ali model follow..  13  11......................................................................................................................................................................................................VTQRLQLRLITADEAEELVQCIRQSQTLHQEAEQFIQATRLNWVKAEAYGFGVFERQTQTLVGMVAINEFYHTFNMASLGYWIGDRYQRQGYGKEATALILFCFERLELPENVPSQALALRCGPNRFLYAGEPKAGIVFSLI............................................................................................................................ 180
9 -5.1201nsl_A mol:protein length:184 Probable acetyltransferase  ali model follow..  14  1................................................................................................................................................................................................GMFTCKVNEHITIRLLEPKDAERLAELIIQNQQRLGKWLFFAENPSSADTYRETIIPDWRRQYADLNGIEAGLLYDGSLCGM-EIGYWIAKEFEGKGIITAARKLITYAFEELELVGNEKSRAVPERIGRDGLYVNGMHHDLVYYSLLK........................................................................................................................... 177
10 -5.0901l8y_A mol:protein length:91 upstream binding factor 1  ali model follow..  11  4....................................................................................................................................................................................................LPESPKYLARKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEM...................................................................................................................................................................................................................... 71

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.