current user: public




Query: PF00083.17; STP1_ARATH/26-489; Sugar (and other) transporter (submitted on 2011.Jan.03, from 10.1.46.41, by public)

Results of BLAST search in COG0610
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# E-value Template Links and tools%idFirst TCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWLast
1 5.000e-14[R] KOG0254 Predicted transporter (major facilitator superfamily)  ali follow..  26  99...............................................................................NRFGRKVSIY---------ALAVPHTSIEW-LYVARVFAGLTGGGMFVVLPIFIGEIADNSIRGRLCSFFTLTMNTGIMVGFVVSSHIAY-------------HVIPCAVVGLPVLYVPEPPQQLIRWKREEEAEKSLRYYRRCDNVSKEFDEMLAIQQQNNDTDDSMSDFLTKRSLKALATGLVLMVANIFTGTFAFNNYMSNIFDAVHTQLDPN-TNTIIIGAVQILGTLASIYLVDRYGRKIL-------------LIVSCAGSAFGLYAFYAEEQKWLPVTLMAFI-IFIANVGVISVTMVVLV--EILPQKIRAVATSFCLGCLSFFAFASLKTFPLMMFHLGLAATMWFCAAVSVICLFVVVCLEETKG.......... 467
2 2.000e-07[G] KOG0569 Permease of the major facilitator superfamily  ali follow..  25  84................................................................................QFGRKHTALIASFLYIPGALLCAAAKWCFLLFVGRIIWSLANGVNTVNATVWIVECAPPQIRGRMAAMQEFFMALGSLLTQAVGVPFSTDEL---WPYNFLPNCAVVVVSMVMFSWVAESPQFIMEKNDVDRARKALAQYHGVDDPSVECEQSIGKNKEKKKTEHPWRDQTSRLIRYCAWVGVMVKIAYVFTGARSLRGYSTFILYTLSFTYSQATWLSFATGLLRLPFTLVPVFLVDRLGRRPLII......................................................................................................................................... 356
3 0.002[P] KOG0252 Inorganic phosphate transporter  ali follow..  23  134..................................................................................................................RFWLGFGIGGDYPLSATIMSEYANKKTRGAFGFGILAGGIVSLIVSSTFDHAFKAPQADYVWRIVLMFGAIPALLTYYWRMKMPETATALVARNT-KQAASDMSKVLQVDLIAEEEAQSNSNSSNPNFTFGLFTREFARRHGLHLLGTTTTWFLLDIAYYSSNLFQKDI-YTAIGWIPAAETMNAIEVFTVSKAQTLIALCGIDILGRFFIQLMGFIFMTIFMFALA-----------IPYDHWRHRENRIGFLIMYSLTMFFANFGPNAFVVPAEIFPARLRSTCHGISAA.......................................................... 448

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.