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2011.Jan.03.22504.0
Query: PF00083.17; STP1_ARATH/26-489; Sugar (and other) transporter (submitted on 2011.Jan.03, from 10.1.46.41, by public)

Results of PDB-BLAST search in B.thetaiotaomicron
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# E-value Template Links and tools%idFirst TCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWLast
1 0.000e+00gi|29349805|ref|NP_813308.1|(removed signal:1-24) xylose/H+ symporter BT_4397 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  29  1.............YDWVVIGGA---KPFYELYFGIAD---------------SPTMQGLAMSVALLGCLIGAMVAGMMADRYGRKPLLLISAFIFLSSAYATGAFSVFSWFLAARFLGGIGIGIASGLSPMYIAEVAPTSIRGKLVSLNQLTIVLGILGAQIANWLCASWNGQMGWRWMFWGAAFPAAVFLLLACFIPESPRWLAMKGKREKAWSVLSRIGGNRYAEQELQMVEQTSASKSEG--GLKLLFSRPFRKVLVLGVIVAVFQQWCGTNVIFNYAQEIFQSAGYSLGDVLFNIVVTGVANVIFTFVAIYTVERLGRRALMLLGAGGLAGIYLVLGTCYFF------------QVSGFFMVVLVVLAIACYAMSLGPITWVLLAEIFPNRVRGVAMATCTFALWVGSFTLTYTFPLLNTALGYGTFWIYSAICVFGFLFFLRALPETKGKSLETLEK.. 432
2 0.000e+00gi|29349014|ref|NP_812517.1| sugar-proton symporter BT_3606 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  27  14.SVVAALGGFLFGYDTAVISGTIA--------------------QVTHLFQLDTLQQGWYVGCALIGSIVGVLFSGILSDSIGRKRTMILSAILFSTSAIGCAFCIDFNQLVVYRIIGGIGIGVVSIVSPLYISEVSVAQFRGRMVSLYQLAVTVGFLGAYLVNYWLEKIVVTEVWRGMLGMETLPAIIFFIIIFFIPESPRWLIVKGQERKATYILEKIYNSKEADFQLNETKSVLVSETRSE--WSILLKPGILKAVIIGVCIAILGQFMGVNAVLYYGPSIFENAGLSGGDSLFYQVLVGLVNTLTTILALLIIDKVGRKKLIYYGVSGMVVSLILIGSYFLFGNAWNI--------SSLFLLAFFLCYVFCCAISICAVIFVLLSEMYPTKIRGLAMSIAGFALWIGTYLIGQLTPWMLQNLTAGTFFLFAIMCVPYMLIVWKLVPETTGKSLEEIERYW 463
3 0.000e+00gi|29345846|ref|NP_809349.1| arabinose-proton symporter BT_0436 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  28  14.SVVAALGGFLFGYDTAVISGTIA--------------------QVTQLFQLDTLQQGWYVGCALIGSIVGVLFAGILSDKLGRKMTMIISATLFSTSALGCAISADFTQLVVYRIIGGVGIGVVSIVSPLYISEVAVAQYRGRLVSLYQLAVTVGFLGAYLINYWLNKIFVTEVWRGMLGMETLPAVLFFIIIFFIPESPRWLIVRGKEEKAVNILERIYNSSEAASQLKETKSVLTSETKSE--WAMLMKPGIFKAVIIGVCIAILGQFMGVNAVLYYGPSIFENAGLSGGDSLFYQVLVGLVNTLTTVLALVIIDRVGRKQLVYYGVSGMVVSLLLIGVYFLFGDSWGVSSLFLLVFFLF--------YVFCCAVSICAVVFVLLSEMYPTKVRGLAMSIAGFALWIGTYLIGQLTPWMLQNLTAGTFFLFAVMCVPYMLIVWKLVPETTGKSLEEIERYW 463
4 0.000e+00gi|29346204|ref|NP_809707.1| D-xylose transporter XylE BT_0794 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  29  17.TSVAILGGLLFGYDTAVISGA---EKGLEAFFLSA-----------SDFQYNKVMHGITSSSALIGCVLGGALSGVFASRLGRRNSLRLAAVLFFLSALGSYYPPNMDLLIAFRVLGGIGVGLASAVCPMYIAEIAPSNIRGTLVSCNQFAIIFGMLVVYFVNYLIMGWTVQEGWRYMFGSEAFPAAFFGLLLFFVPKTPRYLVLVQQEEKAYTILEKINGKKKAQEILNDIKATAQEKTEK------LFTYGV-TVIVIGILLSVFQQAIGINAVLYYAPRIFENAG-AEGGGMMQTVIMGIVNIIFTLVAIFTVDRFGRKPLLIIGSIGMAVGAFAVAMCDSMAIK------------GVLPVLSIIVYAAFFMMSWGPICWVLISEIFPNTIRGKAVAIAVAFQWIFNYIVSSTFPALYDFSPMFAYSLYGIICVAAAIFVWRWVPETKGKTLEDMSKLW 480
5 4.000e-26gi|29345864|ref|NP_809367.1| arabinose ABC transporter BT_0454 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  26  1............................................................................................................................................................................................................................................................................................................................................MVVSLLLIGIYFLFGDSWGVSSLFLLVFF--------LFYVFCCAVSICAVVFVLLSEMYPTKVRGLAMSIAGFALWIGTYLIGQLTPWMLQNLTAGTFFLFAVMCVPYMLIVWKLVPETTGKSLEEIERYW 125
6 3.000e-06gi|29347080|ref|NP_810583.1| putative transmembrane transport protein BT_1670 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  16  28.....................FILAANFLLYFGFWLLIPVLPF-YLSEFFQAGNSTIGIVLSCYTVAALCIRPFSGYLLDTFARKPLYLFAYFIFMLMFAGYLIAGSLTLFIIFRIIHGVSVGGNTVVI-----DIMPSSRRGEGLGYYGLTNNIAMSIGPMFGLFLHDGGVS--------FATIFCYALGSCML............................................................................................................................................................................................................................................................................. 192
7 2.000e-05gi|29347410|ref|NP_810913.1| putative transport protein BT_2000 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  27  47...........................................PTLSHDFGTSPAVTTWIINGYQLAIVVSLLSFSSLGEIIGYRKVFLSGIGLFCITSLICALSDSFWTLTIARIFQGF........................................................................................................................................................................................................................................................................................................................................................ 123
8 3.000e-05gi|29346848|ref|NP_810351.1| putative membrane efflux protein BT_1438 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  20  334..............................................................IFLVATAIGTLLGGPIGDRVGRKYVIWA--------SILGAAPFSLLMTLAWTIILSFCVGMLSSAFPLYAQELLPTKL-GLISGLFFAFGVAGIASAVLGNFGIESVYNVCAY-MPL---------LGLVTFFLP.......................................................................................................................................................................................................................................................................... 463
9 7.000e-05gi|29345571|ref|NP_809074.1| putative permease BT_0161 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  11  40.............................................IRHELGISEFRTNLIAMVTQIGYAAGLLFITPLGDLYQRKKIILVNFFVLIFSLLTIALADNIHLILLASFFT----GACSMIPQIFIAQFSRPENKGRNVGIVLSGLLTGILASRVVS---GFVGELFGWREMYYIA---AAMMFVCAIVV........................................................................................................................................................................................................................................................................... 184
10 7.000e-05gi|29349513|ref|NP_813016.1|(removed signal:1-20) hexuronate transporter BT_4105 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  21  28.........................................................................................................................................................................................................................................................................................................ITSVFSIVYAICMLFAGRFVDWMGTKKGFLWGVWSAGACLHAVCGIVTEAQVGLHSAAELAGATGDVVVVSMYCFLAARCIALGPAAIKVTAEYFPKKDRAYATSIFNAGASIGALIAPLTIPILAKAFGWMAFIVIGGLGFIWMGFWVFMY............... 192
11 9.000e-05gi|29346811|ref|NP_810314.1| putative sugar transport protein BT_1401 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  20  11..................SGGLLVFILTVGVFGIINTEMGGILPLIAETFDVSVPQAGWTVSIFALVVAASAPVTPLL--FLGRKKVMLLALGLFTLSNIISMLTTNFTVLLVARILPAF-------LHPVYVSEKAPKA-----VSRVFVGVSAGMVLGVPV---TSFIASEVSFSMMLFFTVVNALVLIATILFIP.......................................................................................................................................................................................................................................................................... 190
12 2.000e-04gi|29350061|ref|NP_813564.1| glucose/galactose transporter BT_4653 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  18  3.....................ALIMAFWFTISFITNILGPLIPDIIHNFNLSDLAMAGFIPTSFFLAYAIMSIPAGLLIDRFGEKPVLFCGFLMPFIGTILFACMHTYPMLLASSFIIGLGMAMLTVLNPLFIAELA....................................................................................................................................................................................................................................................................................................................................... 130
13 5.000e-04gi|29348522|ref|NP_812025.1|(removed signal:1-30) protein AraJ BT_3113 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  27  11.........................................................GHFISAYALGVCVGAPV-LTLARKYPLKHILLVLVTLIMVGNICAALSPNYWMLLISRFISGFGVG..................................................................................................................................................................................................................................................................................................................................................... 81

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.