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Query: gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQHPVSFPSFSFHDNSIFCNKPIVGTMNINADHEKNLKVSIIYKIQLIGGITEILNGGVINWGIFNLVGYFKSSISLIKIIIIDNTNLVMLYVKIWINNENFLIYSELKTNELLYKPYLLNLIDIIVTMLast
1 -5.690d2pywa_ d.144.1.0 (A:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  16  218........................................................................................IAELKSMFCERAQALIHGDLHTGSVMVTQDSTQVID..... 253
2 -5.380d3v5wa1 a.91.1.0 (A:30-185) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  30FSQKLGYLLFRDFRPLVEFYEEIKKYEKLETEEERVARSREIFDSYIMKELLACSHPFSKSATEHVQGHLGKKQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTRF----CQWKNVELNI....... 155
3 -5.330d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  30  25................................................................................................LNALAASLGVEADTLSEVYEPYLLQA....... 50
4 -5.300d2pula_ d.144.1.6 (A:) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  19  211........................................................................................AAKLKKSFLTSAETLIHGDLHTGSIFASEHETKVID..... 246
5 -5.210d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}  ali model 3D-neighbors follow..  11  3...........................................EASFTSRLPPEIVAALKRKSSRDPNSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTEFKMKKKNVALVMGIKLNTLN........ 80
6 -5.170d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  22.IEPIQGVRWHCQDMSLDFCDSCSDCLHETDIHKED------HQLEPIY................................................................................ 67
7 -5.130d1rf8b1 a.210.1.1 (B:217-314) Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  23  22....................................................................................SHILNVLKDATPIEDVFSFNYPEKEHVKYTYGPFLLQFKDKL... 74
8 -5.110d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  12  94IRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKII---------TRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVLKGKVEYSEMYVDAAAANLVDVIVT. 218
9 -4.730d3cx5d2 f.23.11.1 (D:261-309) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  8.......................................................................RLGLKTVIILSSLYLLSIWVKKFKW---------AGIKTRKFVFNP............ 44
10 -4.680d2ciwa1 a.39.3.1 (A:0-119) Cloroperoxidase {Fungus (Caldariomyces fumago) [TaxId: 5474]}  ali model 3D-neighbors follow..  10...PYDNNTLPYVAPGPTDSRAPCPALNALANHGYIPHGRAISRETLQNAFLNHMGIANSVIELALTNAFVVCEYVTGSDCGDSLVNLTLLAEPHAFEHDHSFSRKDYKQGV................. 119

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.