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Query: gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFIKDTYNMRALCTALEQSAPDTIINTSKEENNSYYCATAHLLRTDVCSLVNRVGIEPLKSGSILSTLEELWQAVGIVYRLYEWQHVSDIDTNFKKLPNNSDFGLVFSVLDCDIEYVFIGKKDSEGNIEFYDPKNSLLIENDDIKKYLYDEDFHRFCIMLIISKSELEELSRESCDQECIMGLast
1 -7.820d1ee8a2 b.113.1.1 (A:1-121) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  14  8..................................................TTRRRLRPLVLGQTLRQVVHRDPARYRNTALAEGRRILEVDRRGK-----------FLLFALEGGVELVAHLGMTGGFRLEPTPHTRAALVLEGRTLYFH-DPRRFGRLFGVRRGDYRE............. 114
2 -6.740d3rk1a_ c.26.2.1 (A:) Putative N-type ATP pyrophosphatase PF0828 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  15  21..IKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGI--EDLKRVLSGLKIQGIVAGALASKIEKVAKELGLEVYTPAWG--RDAKEYMRELLNLGFKIMVVGVSAYGLDESWLGRILDESALEELITLNEKY-EGGEFETFVLDMPLFKYKIVVDKAKKVWEP............. 208
3 -6.430d2ynta1 d.157.1.0 (A:37-295) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  10  7..............EVIKIEDGVYLHTSNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATDRGYQV-SISTHSHEDRTAGLAREGKPVPTHYFKDDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEGLGYVGDASISSWADSIKNIVSKKYPIQMVV. 196
4 -6.240d2hlsa1 c.47.1.0 (A:2-123) automated matches {Aeropyrum pernix [TaxId: 272557]}  ali model 3D-neighbors follow..  5VLDLSEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFLGGEVRWTGIPAGEEIRALVEVI........................................................................ 114
5 -6.070d4onea_ c.2.1.0 (A:) automated matches {Brucella melitensis [TaxId: 224914]}  ali model 3D-neighbors follow..  12  18.........LGIARALAAKGFDLAITDRESDEAVI--GKVAFFKSDLAALVNNAGMGAVERGDFLALKPENFDTIMDVNLRGTVFFTQAVVKAMLAADEVRFPRSIVTISSV------SSVMTSPERLDYCISKAGLTAFVQGLALRLAEARIGVFEVRPGIIRTDMTAKVAARYDALIEGG 209
6 -6.030d1vtnc_ a.4.5.14 (C:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  7................................................SYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYR--------ENQQRWQNSIRHSLSFN--DCFVKVARSPDKPGKGSYWALHPSSGNMFENGCYLR.................................... 94
7 -6.010d2pqca_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Agrobacterium sp. [TaxId: 268951]}  ali model 3D-neighbors follow..  14  217.......GVRTIRLEGRGKLTGQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRTG-LILTLQEMGADIEVI-RLAGGEDVADLRVRSSTLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLS..................................... 354
8 -6.010d2ozka1 c.66.1.48 (A:27-190) Nsp15 {SARS coronavirus [TaxId: 227859]}  ali model 3D-neighbors follow..  14  3.....................NAVYTKVDGIDVEIFENKTTLPVNVAFELWAKRNIKPVPEIKILNNL-----GVDIAANTVIWDYKREAHVSTIGVCTMTDIAKKPTESACSSLTVLFDGRVEGQVDLFRNARNGVLITEGSVKGL................................... 125
9 -5.780d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  13  20................................................RLVDDYGHHPTEVGVTIKAAREGWKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPI-ADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGSVSKISRGLAES..... 151
10 -5.760d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  18  61.............TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVGG....................................................................................................................... 110

FFAS is supported by the NIH grant R01-GM087218-01
9 8 9 2 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.