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anford Burnham Prebys Medical Discovery Institute
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Query: gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKITTLIICSKPAEIAVGHFITMSIKAILLYSYQEYGQHTDVFIQVKFNYGMIEYKFYVNKVKFDDTPDRKLKTTIAHSSQLMGHNLTYEDYAMKKRLVIATALCAAFYAGMKVEHFLTVDACLDAGGAMQNDIFCERLast
1 -7.170PF01698.14; W5BCH7_WHEAT/1-380; Floricaula / Leafy protein  ali follow..  21  228.......FVVTEPGEVARAK------KNGLDYLFHLYEQCRLFLLQVQFRYASKVGASYINKPKM-HCLDEDASDALRRAYKARGENVGAWRQACYAPLVDIAAIDAVFAAHPRLAIWYVPTRLRQL............ 372
2 -6.180PF04847.10; RCAN1_HUMAN/75-246; Calcipressin  ali follow..  11  4....................FVDGLCRAKFESLFRTYDKDITFQYFKSFKRVR---------INFSNPFSAADARLQLHKTEFLGKEMKL................................................. 64
3 -6.110PF00054.21; AGRIN_CHICK/1933-2064; Laminin G domain  ali follow..  11  1....................IKTEATQGLILWSGKGLERSD--YIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKA--------YRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGG.......... 99
4 -6.010PF10394.7; J3KFH4_COCIM/7-166; Histone acetyl transferase HAT1 N-terminus  ali follow..  10  6.NDAVQVSIVQPKGDGKLSTLSTFY-----EFTYSIFGDSETIFLMIQLRFAAHDLRSNVCDEKFKTVKDISAVDLNKILKPFLPEESFTPLKKFEESLTKDKSAKDFKPPGEIVHTYTKGDRNYEV............ 134
5 -5.840PF00849.20; A8BNG7_GIAIC/150-391; RNA pseudouridylate synthase  ali follow..  18  2......HVFCEKPASMPVGKYCYHSVNELVASPDTKLTTKKSLRACNRID-GLI-VKVYLANCR........................................................................... 85
6 -5.640PF04891.10; D3RS06_ALLVD/31-191; NifQ  ali follow..  19  74.................................................................CSPSETWMVRVVASGCLASDHDLGLWNRAELTDLMRFPELAARNVQDMKWKRFLYKQLCESEGIYVCRAPSCG. 151
7 -5.640PF00163.17; F5WS31_ERYRF/3-91; Ribosomal protein S4/S9 N-terminal domain  ali follow..  21  43..................................SNYGLQLREKQRIRYTYGVTEKQF------------YNTFKKASKLEGVAGHNF................................................... 84
8 -5.590PF15092.4; G1Q8L8_MYOLU/1-89; Uncharacterised protein family UPF0728 topsan  ali follow..  20  10...................................RYGPYSAVGLSVEHRTFRLE--------------------GLQAVLAADGHQVTLEKMEDWNVVELKVNEEVFFHCNIK----------LGIRGDGKLDPLCQE 84
9 -5.580PF13645.4; R6WWY2_9PORP/49-215; L,D-transpeptidase catalytic domain  ali follow..  22  25.KDIITLIDFTKPSTEERLYVLDIRHKRLLFSSLVSHGKNSGGNYATSFSNKVNSYKFFVTENTYQGKNGYSLV--------LNGLEKGINDRAKERAIVVHGA................................... 123
10 -5.580PF13387.4; S6AFM8_PSERE/117-291; Domain of unknown function (DUF4105 topsan)  ali follow..  12  13.HSTVLVFPAAYLNSPSFGHTLTVMLSYALNFGAFIEGSDNSILYAWKGLMGGYPGLFALSRLENRDLWEYRLNLTPEETGRMVEHVWELKQIRF............................................ 130

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.