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anford Burnham Prebys Medical Discovery Institute
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Query: gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQHPVSFPSFSFHDNSIFCNKPIVGTMNINADHEKNLKVSIIYKIQLIGGITEILNGGVINWGIFNLVGYFKSSISLIKIIIIDNTNLVMLYVKIWINNENFLIYSELKTNELLYKPYLLNLIDIIVTMLast
1 -6.3103jb9_h mol:protein length:265 Pre-mRNA-splicing factor cwf15  ali model follow..  152......................SNSESSDEESDSEDETQQLLRELENIKQERKREQMLQEEKNRALEQEKREREIAFGNELLNKASSGSFQVKRRWDEDVVFRNTHK--VNDMLHKKFLARFVD..... 265
2 -6.2104gsj_A mol:protein length:291 Ubiquitin-like modifier-activating enzyme ATG  ali model follow..  10  15FASALATSFFQELSLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWEDGSFVIFADLKKYRFYY-PCFQ......... 148
3 -5.8003t7h_A mol:protein length:291 Ubiquitin-like modifier-activating enzyme ATG  ali model follow..  10  15FKSFLDTSFFQELSLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWEDGSFVIFADLKKYRFYY.............. 140
4 -5.7302zfd_B mol:protein length:123 Putative uncharacterized protein T20L15_90  ali model follow..  13  3...ARRMNAFDIISGSFNLSGLFGDARKYDRVERFVSAWTAERVVERLEEIVSAENLTVAKKETWGMIEGQKGNFAMVVEINQLTDELVMIEVRKRQRAA--ASGRDLWTDTL--RPFFVELV...... 121
5 -5.7002pyw_A mol:protein length:420 Uncharacterized protein  ali model follow..  16  220........................................................................................IAELKSMFCERAQALIHGDLHTGSVMVTQDSTQVID..... 255
6 -5.6801env_A mol:protein length:123 HIV-1 ENVELOPE PROTEIN CHIMERA CONSISTING OF  ali model follow..  14  16..YHIENEIARIKKLIGEARQLLSGIVQQQNNLLRAIEAQ--HLLQLVWGIKQ-----------------LQARILAVERYLKDQNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLEL.... 121
7 -5.3602l9v_A mol:protein length:70 Pre-mRNA-processing factor 40 homolog A  ali model follow..  16  38...........................................................................................AMKMIINDPRYSALAKLSEKKQAFNAYKVQT....... 68
8 -5.2802kiq_A mol:protein length:62 Transcription elongation regulator 1  ali model follow..  12  30...........................................................................................FAAKHAKDSRFKAIEKMKDREALFNEFVAAA....... 60
9 -5.2701rf8_B mol:protein length:100 Eukaryotic initiation factor 4F subunit p150  ali model follow..  23  24....................................................................................SHILNVLKDATPIEDVFSFNYPEKEHVKYTYGPFLLQFKDKL... 76
10 -5.1703fbs_A mol:protein length:297 Oxidoreductase  ali model follow..  1MKFDVIIISYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDSAVFHCPY........... 133

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.