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anford Burnham Prebys Medical Discovery Institute
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Query: gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFIKDTYNMRALCTALEQSAPDTIINTSKEENNSYYCATAHLLRTDVCSLVNRVGIEPLKSGSILSTLEELWQAVGIVYRLYEWQHVSDIDTNFKKLPNNSDFGLVFSVLDCDIEYVFIGKKDSEGNIEFYDPKNSLLIENDDIKKYLYDEDFHRFCIMLIISKSELEELSRESCDQECIMGLast
1 -7.6704ubq_A mol:protein length:229 Beta-lactamase  ali model follow..  13  9..............KIEKLEEGVYVHTSFEEVNGWGVVSKHVVLVNTDAYLIDTPFTATDTEKLVNWFVERGYKIGTISSHFHSDSTELLKKDGKVQAKNSFSGVSYWLVKNKIEVFYPGPGHTQDNVVVWLPEKKILFGGCFVKPNLGDANLEAW-------PKSAKILMSKYVKAKLVV. 195
2 -7.3104f6h_A mol:protein length:236 Beta-lactamase  ali model follow..  14  8..............KIEKLDEGVYVHTSFEEVNGWGVVPKHVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIGSISSHFHSDSTELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGGFIKPNLGDANIEAW-------PKSAKLLKSKYGKAKLVV. 194
3 -6.6902npl_X mol:protein length:96 Coxsackievirus and Adenovirus Receptor  ali model follow..  26  59......................SVKNASSEYSGTYSCTVRNRVGSDQCLLRLNVVPPSNK.......................................................................................................................... 96
4 -6.6803rjz_A mol:protein length:237 N-type ATP pyrophosphatase superfamily  ali model follow..  15  25..IKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGI--EDLKRVLSGLKIQGIVAGALASKIEKVAKELGLEVYTPAWG--RDAKEYMRELLNLGFKIMVVGVSAYGLDESWLGRILDESALEELITLNEKY-EGGEFETFVLDMPLFKYKIVVDKAKKVWEP............. 212
5 -6.4702d13_A mol:protein length:227 hypothetical protein PH1257  ali model follow..  12  25..LKSGLRVRYLVSMVSENEESYMYHTPNVELTSLQARALGI--EDLKNVLEGLKVDGIVAGALASRIENVARELGLKVYTPAWE--KDPYQYMLEIIKLGFKVVFVAVSAYGLNESWLGRELNYKNLEELKKLSEKY-EGGEFETFVLDMPFFKAKIVIDDAEKFWDG............. 212
6 -6.2403abd_X mol:protein length:52 DNA polymerase zeta catalytic subunit  ali model follow..  25  1...........MLTPTPDSSPRSTSSPSQSKNGSFTPRTANILKP----------MSPPSREEIMATLLDH............................................................................................................... 51
7 -6.1503i4u_A mol:protein length:270 ATP-dependent RNA helicase DHX8  ali model follow..  16  14.........................................................GSPMETLITAMEQLY-TLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNV-FYRPKDKQ-ALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFI.. 133
8 -6.1402ynt_B mol:protein length:233 GIM-1 PROTEIN  ali model follow..  10  8..............EVIKIEDGVYLHTSNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATDRGYQV-SISTHSHEDRTAGLAREGKPVPTHYFKDDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEALGYVGDASISSWADSIKNIVSKKYPIQMVV. 197
9 -6.1104one_A mol:protein length:262 3-oxoacyl-(Acyl-carrier protein) reductase  ali model follow..  12  21.........LGIARALAAKGFDLAITDRESDEAVI--GKVAFFKSDLAALVNNAGMGAVERGDFLALKPENFDTIMDVNLRGTVFFTQAVVKAMLAADEVRFPRSIVTISSV------SSVMTSPERLDYCISKAGLTAFVQGLALRLAEARIGVFEVRPGIIRTDMTAKVAARYDALIEGG 212
10 -6.0902gg4_A mol:protein length:455 3-phosphoshikimate 1-carboxyvinyltransferase  ali model follow..  14  222.......GVRTIRLEGRGKLTGQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRTG-LILTLQEMGADIEVI-RLAGGEDVADLRVRSSTLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLS..................................... 359

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.