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Query: gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLMRQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSRRIVGSAISSSPDAELVCRALast
1 -17.5004fcy_A mol:protein length:529 Transposase  ali model follow..  13  55FATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVDGRGASRRERLELAAREHGWSISRATAFRRIQQLDEAMVVACREGEHALMHLIP----AQQRTVEHLDAMQWINGD-VFVRWFNG--KTWFWQDVKTRKILGWRCDVSENIDSIRLS 241
2 -11.8001vsd_A mol:protein length:152 INTEGRASE  ali model follow..  17  7......................................................................................................GPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQ... 53
3 -11.7003o4n_A mol:protein length:150 integrase  ali model follow..  17  7......................................................................................................GPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQ... 53
4 -11.4001asu_A mol:protein length:162 AVIAN SARCOMA VIRUS INTEGRASE  ali model follow..  17  9......................................................................................................GPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQ... 55
5 -11.0001cz9_A mol:protein length:162 AVIAN SARCOMA VIRUS INTEGRASE  ali model follow..  17  9......................................................................................................GPLQIWQTNFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQ... 55
6 -10.2001c0m_A mol:protein length:238 PROTEIN (INTEGRASE)  ali model follow..  17  8......................................................................................................GPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQ... 54
7 -10.1001b4a_A mol:protein length:149 ARGININE REPRESSOR  ali model follow..  19  2.....................NKGQRHIKIREI--MSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQLVKVANGRYKYSLPSDQRFNPLQKLKRALVDVFIKLDGTGNLLVLRTLPG--AIGVLLDLDWDEIVG............... 120
8 -9.9805cz1_A mol:protein length:169 integrase  ali model follow..  17  8......................................................................................................KPRVLWQMDVTHVSEFGKLKYVHVTVDTYSHFTFATARTGEATKDVL... 54
9 -9.9801f9n_A mol:protein length:149 ARGININE REPRESSOR/ACTIVATOR PROTEIN  ali model follow..  18  2.....................NKGQRHIKIREI--TSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLVKVNNGSYKYSLPADQRFNPLSKLKRALMDAFVKIDSASHMIVLKTMPG--AIGALMDLDWDEMMG............... 120
10 -9.7004fw1_A mol:protein length:222 Integrase  ali model follow..  17  8......................................................................................................GPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQ... 54

FFAS is supported by the NIH grant R01-GM087218-01
1 0 1 6 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.