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Query: gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKISSFISTSLPLPTSVSGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLMLast
1 -68.1001hy5_A mol:protein length:136 YERSINIA PESTIS VIRULENCE PROTEIN YOPE  ali model follow..  100  1.........................................................................................APTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLM 130
2 -51.6001r4t_A mol:protein length:153 exoenzyme S  ali model follow..  24  1.........................................................................................GSASSAVVFKQMVLQQALPMTLKGLDK-ASELATLTPEGLAREHSRLASGDGALRSLSTALAGIRAGSQEESRIQAGRLLERSIGGIALQQWGTTGGAASQLVASPELRREITDQLHQVMSEVALLRQAV 132
3 -27.5001g4u_S mol:protein length:383 PROTEIN TYROSINE PHOSPHATASE SPTP  ali model follow..  30  2................................................................................................DVGAESKQPLLDIALKGLKRTLPQLEQMDGNSLRENFQEMASGNGPLRSLMTNLQNLNKIPEAQLNDYVTTLTNIQVGVARFSQWGTCGGEVERWVASTHELTQAVKKIHVIAKELKNV.... 123
4 -18.2001l2w_I mol:protein length:69 Outer membrane virulence protein yopE  ali model follow..  100  2.................SGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKP...................................................................................................................................... 69
5 -16.7004jmf_A mol:protein length:50 Exoenzyme T  ali model follow..  26  1.............................EARQVATPREAQQLAQRQEAPKGEGLLSRLGAALARPFVAIIEWLGKLLG............................................................................................................................................ 50
6 -7.3504b2f_A mol:protein length:214 PUTATIVE ANTIGEN P35  ali model follow..  76..................................................................IKKLATILAQTSSSNDYHYTLIGLIFWTGFKIQEAFESAVNILTKDEQKRLIFNFRTKTVKEIQENFEKLMQERNSWIKIVDNIIGEYDKNTGGCKADGKILGE-----------------IRVGYEHELDSNKSMQILNNIETPLKTCCD.. 210
7 -6.4504axz_A mol:protein length:273 PUTATIVE ANTIGEN P35  ali model follow..  135..................................................................IKKLATILAQTSSSNDYHYTLIGLIFWTGFKIQEAFESAVNILTKDEQKRLIFNFRTKTVKEIQENFEKLMQERNSWIKIVDNIIGEYDKNTGGCKADGKILGE-----------------IRVGYEHELDSNKSMQILNNIETPLKTCCD.. 269
8 -6.2401sfk_A mol:protein length:76 Core protein  ali model follow..  13  6..............................................................................................................................TGLKRAMLSLIDGRGPTRFVLALL-------------AFFRFTAIAPTRAVLDRWRSV------------NKQTAMKHLLSFKKELGTLTSAI 73
9 -5.9103kap_A mol:protein length:147 Flavodoxin  ali model follow..  11  9.............................................................................................SSTGNTESIAQKLEEVAAGGHEVTLLNAAEASADNLADGYDAVLMGCSAWGMEDLELQD-------DFAPLFDEMENMGLKGKKLAAFASGDMEYEHYCGAVPAIEEKARG............... 113
10 -5.9103f6r_A mol:protein length:148 Flavodoxin  ali model follow..  11  10.............................................................................................SSTGNTESIAQKLEEIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQD-------DFLSLFEEFDRIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKE............... 114

FFAS is supported by the NIH grant R01-GM087218-01
1 0 9 0 2 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.