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Query: gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPELast
1 -93.9005bq5_A mol:protein length:189 Insertion sequence IS5376 putative ATP-bindin  ali model follow..  47  2................................................................PNKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKL-RVFVKPTVLIIDEMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIV-GDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEEKQ..... 189
2 -35.7003ecc_A mol:protein length:185 DNA replication protein DnaC  ali model follow..  23  2.......................................................................KRYWNANLDTYHPKNVSQNRALLTIVFVHNGKGLTFVGSPGVGKTHLAVATLKAIYKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT-VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLSTIITTNYSLQREEESSV-ASRLGENVVSKIYEMNELLVIKGSDLR................ 185
3 -27.3002w58_A mol:protein length:202 PRIMOSOME COMPONENT (HELICASE LOADER)  ali model follow..  17  1.....................................................DERKRQESLIQSMFMP--REILRASLSDVDLNDDGRIKAIRFARFVAEMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDY-IKKVPVLMLDDLGAEAMSSWVRDDVFGPIYRMFENLPTFFTSNFDMQQLAHHLT-EKVKAARIMERIRYLAYPIEITGPNRR................ 202
4 -24.9004m4w_J mol:protein length:317 Primosomal protein DnaI  ali model follow..  16  102...............................................PVKRKLDQQKKQQSLMKSMYIQ--QDLLGATFQQVDISDPSRLAMFQHVDFLKSGKGLYLYGKFGVGKTFMLAAIANELAEKEYSSMIVYVPEFVRELKNSLQDQTLEEKLNM-VKTTPVLMLDDIGAESMTSVRDEVIGTVLQHRMQQLPTFFSSNFSPDELKHHFT-EEVKAARLMERILYLAAPIRLDGENRR................ 309
5 -23.1002qgz_A mol:protein length:308 Putative primosome component  ali model follow..  18  94...............................................KELVEAQKQAAISERIQLVSLP--KSYRHIHLSDIDVNNASRMEAFSAIDFVEQQKGLYLYGDMGIGKSYLLAAMAHESEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDA-VKNVPVLILDDIGAEQATSVRDEVLQVILQYRMEELPTFFTSNYSFADLERKWA-ETWQAKRVMERVRYLAREFHLEGANRRLE.............. 302
6 -17.7002kjq_A mol:protein length:149 DnaA-related protein  ali model follow..  18  1................................................................MGSHMDYPSFDKF----LGTENAELVYVLRH----KHGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM---------------PLTDAAFEAEYLAVDQVEKLGNEEQAL--LFSIFNRFRNSGKGFLLLGSEYTPQQLVIRED------LRTRM............................... 133
7 -17.0003bos_A mol:protein length:242 Putative DNA replication factor  ali model follow..  16  19.................................................................VHLPDDETFTSY---YPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS----------ISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAERGSLIVSASASPMEWGLTYQMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR.......... 208
8 -15.4001l8q_A mol:protein length:324 Chromosomal replication initiator protein dna  ali model follow..  21  7...........................................................................KYTLENFIVGEGNRLAYEVVKEALENLGSIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINE-FRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLEKQIILASDRH-----------PQKLDGVSDRLVSR............................ 155
9 -15.0002z4r_A mol:protein length:440 Chromosomal replication initiator protein dna  ali model follow..  14  48....................LEKKYYSVLSKAVKVVLGNDATFEITYEAFEPHSSYSEPLVKKRAVLLTPLNPDYTFEFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGQIVICSDRE--QMGKLEPPDEETRKSIARK................................ 274
10 -13.5004xgu_A mol:protein length:424 Putative pachytene checkpoint protein 2  ali model follow..  17  106..............................................LSQNIGDDDGDESIIGSQLWQLPCVEFDSIWENLIYDSNLKNEVMSYVAALAINVNRLILLTGPPGTGKTSLCKGLAQHSIRMNDKYSKSVMLEINSHSLFSKWFSESGKLVQKMFDQIDFVLIDEVESLGMCRESSNALLTQIDRIRRRDNVLITSNLE-----------STLDKALVDRADIVKNV......................... 319
11 -13.5004wia_A mol:protein length:233 Putative flagella-related protein H  ali model follow..  10  24..................................................................................................IPHGSLIIIEGEESTGKSVLCQRLAYGFLQNRYSVTYVSTQLTTLEFIKQMNSDGFLKKVMETRAEKDVIIFDSISAL--SEVNVDDLMAFFKRITALKKIIICTVNPKELPESVLTIIRTSATMLIGDLKNLAKILKYNMAPGSYQK............. 213
12 -12.7004yds_A mol:protein length:228 Flagella-related protein H  ali model follow..  16  17..................................................................................................IPYPASIMIEGDHGTGKSVLSAQFVLGFLLSDKKGYVITTEQTTKDYLIKMKEEKILDVIVNFIRNIDFIVIDSLSILAAFSKEKQLFMKDIRVLVNTGKMILFTIHPDTFDEEMKSKITSIVDVYLGRRVKILERVKTTGGIS................. 203
13 -12.6002w0m_A mol:protein length:235 SSO2452  ali model follow..  14  20..................................................................................................IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMKISYYLKRVLNKWNTIYATSQYAITTSQAFGFGVEHVADGIIGELHRYILIEKMRQTDH................. 212
14 -12.5003nbx_X mol:protein length:500 ATPase ravA  ali model follow..  17  25....................................................................................YERSHAIRLCLLAAL-SGESVFLLGPPGIAKSLIARRLKFAFQNARA-TRFSTPEEVFLSIQALKDEGRYERLTSGYLPEAEIVFLDEI------KAGPAILNTLLTAINERQLLVAASNELPEADSSL--------EALYDRMLIRLWLDKVQDKA.................. 186
15 -11.7002i3b_A mol:protein length:189 Human Cancer-Related NTPase  ali model follow..  18  1.....................................................................................................ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKM---ELFSQLFIQAVRQTLSTPGTIILG---------TIPVPKGKPLALVEEIRNRVKVFNVTKEN.................. 172
16 -11.6002px0_A mol:protein length:296 Flagellar biosynthesis protein flhF  ali model follow..  12  14................PQIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGLTEENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAIMLEKHKKIAFITTDTLQAPLEVCYTKEEFQQAKEL-FSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSQSFLVLSATAKYEDMKHIVKR-NQYIFTKIDETTSLGSVFNI...................... 255
17 -11.4002dr3_A mol:protein length:247 UPF0273 protein PH0284  ali model follow..  14  20..................................................................................................IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQREFIEVLRQAIRNAKRVVVDSVTTLYINKPAMSIILQLKRVLAGTGTSIFVSQVSVGERGFGGPGVEHGVDGIIGELKRSLIVWKMRGTSH................. 217
18 -11.2001nsf_A mol:protein length:273 N-ETHYLMALEIMIDE SENSITIVE FACTOR  ali model follow..  15  64......................................................................................................VSVLLEGPPHSGKTALAAKIAEESNFPFIKI---CSPDKMIGFSETAKCQAMKKIFDDAYSQLSCVVVDDIDYVPIGPRFSNLVLQALLVLLKRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGK 228
19 -11.1001d2n_A mol:protein length:272 N-ETHYLMALEIMIDE-SENSITIVE FUSION PROTEIN  ali model follow..  14  59......................................................................................................VSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYSQLSCVVVDDIDYVPIGPRFSNLVLQALLVLLKRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGK 223
20 -11.1002x8a_A mol:protein length:274 NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE  ali model follow..  17  41..................................................................................................LVTPAGVLLAGPPGCGKTLLAKAV---ANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE-LLTEMDGLEARQQVFIATNRPLDKTLFVGLPPPADRLAILKTITKNGTKPPLDAD................... 202
21 -11.1003b85_A mol:protein length:208 Phosphate starvation-inducible protein  ali model follow..  19  5....................................................................................IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEA-KLGFLPGTLNEKIDPYLRPLHDALRDMVEPEVIPKLMEAGIVEVAPLAYMRGR---TLNDAFVILDEAQNTTPAQMKMFLTRLGFGSKMV-VTGDITQV............... 161
22 -11.0004d80_A mol:protein length:316 AAA ATPASE, CENTRAL DOMAIN PROTEIN  ali model follow..  17  48...............................................................................DVKEALKEAVVYPSKRPDLFPLGRGILLYGPPGCGKTMIAAAV---ANELDSEFIHVDAASIMSKWLGEAEK-KTARELSKKENKPAIIFIDELDALLASYTSEVGGEARVRNQFSKVYVIGATNKPWR-----------LDEPFLRRFQKRIYI......................... 208
23 -11.0001jbk_A mol:protein length:195 CLPB PROTEIN  ali model follow..  19  29.......................................................................................EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAILFIDELHTM--KADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSV......................... 187
24 -10.8002p65_A mol:protein length:187 Hypothetical protein PF08_0063  ali model follow..  20  29.......................................................................................TEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQVMFIDEIHTV--VAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKAL....................................... 174
25 -10.7001xwi_A mol:protein length:322 SKD1 protein  ali model follow..  22  46......................................................................................................RGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENEFLVQMVGVDNDGILVLGATNIPWV-----------LDSAIRRRFEKRIYI......................... 176
26 -10.6004lgm_A mol:protein length:295 Vps4 AAA ATPase  ali model follow..  16  33...............................................................................DVKEALREAIIYPTKRPDLFPLGRGILLYGPPGCGKTMIAAAV---ANEIDSIFMQLDAASVMSKWLGEAEK-KMAREESKKQNKPAIIFIDQLDALLGVYSTNQFLKEMLLDKSENYKVYVATNKPWR-----------LDEAFLRRFQKRIYV......................... 193
27 -10.6001ye8_A mol:protein length:178 Hypothetical UPF0334 kinase-like protein AQ_1  ali model follow..  15  2.......................................................................................................KIIITGEPGVGKTTLVKKIPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYREAKKDRRKVIIIDEIGKM---ELFSKKFRDLVRQIMHDPNVNVVATIPIRD-----------VHPLVKEIRRLAVLIELTPEN.................. 164
28 -10.5002r2a_A mol:protein length:199 Uncharacterized protein  ali model follow..  13  9.........................................................................................................LITGTPGSGKTLKMVSMMANDEMFKPDENETDAKKLPKSTDEQLSAHDMYEWIKKPENIGSIVIVDEAQDVSAGSKIPENVQWLNTHRHQGIDIFVLTQ-----------GPKLLDQNLRTLVRKHYHIASNKM.................... 155
29 -10.4004lcb_A mol:protein length:367 Cell division protein CdvC, Vps4  ali model follow..  17  106...............................................................................DVKEALKEAIIYPSKRPDLFPLGRGILLYGPPGNGKTMLAAAV---ANEIDSYFIHVDAASIMSKWLGEAEK-NTAREYSKKDNKPAIIFVDEIDALLGTYTSNQFLKEMIMDKNENYMVYVATNKPWR-----------LDEPFLRRFQKRIYV......................... 266
30 -10.4003eie_A mol:protein length:322 Vacuolar protein sorting-associated protein 4  ali model follow..  20  52......................................................................................................SGILLYGPPGTGKSYLAKAV---ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGELLVQMVGNDSQGVLVLGATNIPWQ-----------LDSAIRRRFERRIYI......................... 181
31 -10.3003eih_A mol:protein length:340 Vacuolar protein sorting-associated protein 4  ali model follow..  20  70......................................................................................................SGILLYGPPGTGKSYLAKAV---ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGELLVQMVGNDSQGVLVLGATNIPWQ-----------LDSAIRRRFERRIYI......................... 199
32 -10.3003n70_A mol:protein length:145 Transport activator  ali model follow..  12  19................................................................................................QLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIA----------LAQGGTLVLSHPEHLTREQQYH--LVQLQSQEHRPFRLIGIGDTSLVE--------LAASNHIIAELYYCFAMTQIA..................... 140
33 -10.2002rko_A mol:protein length:331 Vacuolar protein sorting-associated protein 4  ali model follow..  21  55......................................................................................................SGILLYGPPGTGKSYLAKAV---ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGELLVQMVGNDSQGVLVLGATNIPWQ-----------LDSAIRRRFERRIYI......................... 184
34 -10.0004ypn_A mol:protein length:293 Lon protease  ali model follow..  14  53MPEAVKTKALKELDRLER----------MQQGSPEATVARTYLDWLTEVPWSKADPEVLD-------INHTRQVLDEDHYGLKDVKERILEYLAVRQLTQGLDVLVLVGPPGVGKTSLGRSIARSMNRKFHRISLGGVRD--RRTYIGAMPGKLIHAMKQVGVINPVILLDEIDKMSSDWRGASAMLEVLDPEQNNTFTDHYLDVPYDLSKVFFITTANTLQTIPRPLLDRMEVIEIPG.................... 287
35 -9.9902qp9_X mol:protein length:355 Vacuolar protein sorting-associated protein 4  ali model follow..  20  85......................................................................................................SGILLYGPPGTGKSYLAKAV---ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGELLVQMVGNDSQGVLVLGATNIPWQ-----------LDSAIRRRFERRIYI......................... 214
36 -9.9403h86_B mol:protein length:192 Adenylate kinase  ali model follow..  12  2....................................................................................................KNKVVVVTGVPGVGGTTVTQKAMDILSEEGLNYKMVNFGSAMFDVANEEGLASDRDQMRKL--------------PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVKTPKGYLPGLPAWVLTELN-----DIVIVVETDGDEILMRRLSDESRKRD.. 141
37 -9.8905fhh_A mol:protein length:442 ATP-dependent DNA helicase PIF1  ali model follow..  18  11..........................................................................................EQAAVLRAVLKGQSIFFTGSAGTGKSYLTASTGVAACHGGTTLHAFAGIGSGQAPLAQCVALAQRPGVRQGWLNCQRLVIDEISMVEAD------LFDKLEAVARA---VRQQNKPFGGIQLIICGD.......................................... 144
38 -9.8805c3c_A mol:protein length:281 CbbQ/NirQ/NorQ domain protein  ali model follow..  18  38..................................................................................................YEARIPMMLKGPTGCGKSRFVEHMAWKLNRPLITIACMTASDLVGRYLLDKDGTRQDGPLTVAARIGAICYLDEIVEA--RQDTIVVIHPLTDHRHPDFQIVISYNPGYQ------SLMKDLKQSTKQRFG.............................. 178
39 -9.8201ak2_A mol:protein length:233 ADENYLATE KINASE ISOENZYME-2  ali model follow..  22  14...................................................................................................PKGVRAVLLGPPGAGK-----GTQAPKLAKNFCVCHLATGDM---LRAMVASGSELGKKLKATMDAGKLVSDEMGFLPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP----------DSLLIRRITGRLIHPQ-----SGRSYHEE.............. 156
40 -9.8201kht_A mol:protein length:192 adenylate kinase  ali model follow..  12  2....................................................................................................KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKM--------------PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPG---LPSWVLNEL-NPDLIIVVETTGDEILMRRMSDETRVRD.. 141
41 -9.6403co5_A mol:protein length:143 Putative two-component system transcriptional  ali model follow..  11  22................................................................................................AAAKRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGG--------------VLYVGDIAQYSRNIQ-TGITFIIGKAERCRVRVIASCSYAAGSDGISCEEK----------LAGLFSESVVR..................... 138
42 -9.5102c9y_A mol:protein length:242 ADENYLATE KINASE ISOENZYME 2, MITOCHONDRIAL  ali model follow..  22  14...................................................................................................PKGIRAVLLGPPGAGK-----GTQAPRLAENFCVCHLATGDM---LRAMVASGSELGKKLKATMDAGKLVSDEMGFLPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP----------DSLLIRRITGRLIHPK-----SGRSYHEE.............. 156
43 -9.4703upu_A mol:protein length:459 ATP-dependent DNA helicase dda  ali model follow..  15  7.......................................................................GLVPRGSHMTFDDLTEGQKNAFNIVKAIKEKKHHVTIGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILAKCRVLICDEVSMY-----DRKLFKILLSTIPPWCTIIGIGDN--KQIRPVDPGENTFYQCELTEVKRSNAPIIDVATDVR................ 205
44 -9.4104qhs_A mol:protein length:267 Flagellar regulatory protein C  ali model follow..  17  30...................................................................................................KTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEAYEKGAFTGAVQACPGKFEQILLDEISEMDLNLQ-AKLLRVLQEREVERLGVLATSNRDLKQ--------YVQAGHFREDLYYRLNVFPLTWPALCERKD............ 187
45 -9.3904pzl_A mol:protein length:242 Adenylate kinase  ali model follow..  14  16...................................................................................................SNAMRIILLGAPGAGKGTQA-----KIIEQKYNIAHISTGDM---IRETIKSGSALGQELKKVLDAGELVSDEF--ISKNDCNNGFLLDGVPRTIPQAQELDKLGVNIDYIVEVDVADNLLIERITGRRIHPA-----SGRTYHTK.............. 154
46 -9.3603a4l_A mol:protein length:260 L-seryl-tRNA(Sec) kinase  ali model follow..  14  1..................................................................................................MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFKYEEFIKKSTYRLIDSALKNYWVIVDDTNYYNSMRRD----LINIAKKYNKNYAIIYLKASLDVLIR--ERGEKIPNEVIKKMYEK............................ 135
47 -9.2704r2h_A mol:protein length:210 STIV B204 ATPase  ali model follow..  15  1..................................................................................................MNPDDIVVIIGRKRSGKSYLIKHYFIPVLKAHKISYIIDDHNLLRSGSEYSKFGYNVVTLSDIVSGTSVLIIDEA-HFKYRQKVTPAIDEALHANRHAGIGLILSTQRVYDLMPIVYKQ--ADLIIMFYTREPNELKWIS..................... 169
48 -9.2502qz4_A mol:protein length:262 Paraplegin  ali model follow..  21  5..............................................................................FKDVAGMHEAKLEVREFVDYLKSPEGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARAR---APCIVYIDEIDAV--KKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGAL.............................. 162
49 -9.2503be4_A mol:protein length:217 Adenylate kinase  ali model follow..  15  3...................................................................................................SKKHNLILIGAPGSGK-----GTQCEFIKKEYGLAHLSTGDM---LREAIKNGTKIGLEAKSIIESGNFVGDEIGFVPRTIPQAEGLAKILSEIGDSLTSVIYFEID----------DSEIIERISGRCTHPA-----SGRIYHVK.............. 145
50 -9.2201ki9_A mol:protein length:192 adenylate kinase  ali model follow..  12  2....................................................................................................KNKLVVVTGVPGVGGTTITQKAMEKLSEEGINYKMVNFGTVMFEVAQEENLVEDRDQMRKLDPDTQKRIQKLA-------------GRKIAEMVKESPVVVDTHSTIKTPKGYLPG---LPVWVLNEL-NPDIIIVVETSGDEILIRRLNDETRNRD.. 141
51 -9.1905ean_A mol:protein length:1059 DNA replication ATP-dependent helicase/nuclea  ali model follow..  16  582..........................................LSKLMESTDPSKRLRELIIDFREPQFIAYHDAKDTVANILKGLNKPQRQAMKRV--LLSKDYTLIVGMPGTGKTTTICALVRILSACGFSVLLTSVDNILLKLAKFKQSHKVHPDIQKFTKTFDFCIVDEASQISQPVCLGPLFFVLVGDHQQLPPLVVNRE----------ARALGMSESLFKRLERNESAVVQLTVQYRMNRKIMS......... 839
52 -9.1901sxj_B mol:protein length:323 Activator 1 37 kDa subunit  ali model follow..  10  26.....................................................................................NKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQA--LRRTMELYSNSTRFAFACN---------------QSNKIIEPLQSQCAILRYS..................... 164
53 -9.1903whk_A mol:protein length:270 Proteasome-activating nucleotidase, 26S prote  ali model follow..  20  48..................................................................................................IDPPKGVLLYGPPGCGKTLMAKAI---AHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAI--EREVNRTLMQLLAEM-GNVKVIAATNRP-------ILDPALLRPGRFDRLIERAQILQIHSRKMTTDD............. 208
54 -9.1801aky_A mol:protein length:220 ADENYLATE KINASE  ali model follow..  17  2...................................................................................................SESIRMVLIGPPGAGK-----GTQAPNLQERFHAAHLATGDM---LRSQIAKGTQLGLEAKKIMDQGGLVSDDIGFIPRTIPQAEKLDQMLKEQGTPLEKAIELKVD----------DELLVARITGRLIHPA-----SGRSYHKI.............. 145
55 -9.1804ypl_A mol:protein length:555 Lon protease  ali model follow..  13  20MPEAVKTKALKELDRLER----------MQQGSPEATVARTYLDWLTEVPWSKADPEVLD-------INHTRQVLDEDHYGLKDVKERILEYLAVRQLTQGLDVLVLVGPPGVGKTSLGRSIARSMNRKFHRISLGGVRD--RRTYIGAMPGKLIHAMKQVGVINPVILLDQIDKMSSDWRGASAMLEVLDPEQNNTFTDHYLDVPYDLSKVFFITTANTLQTIPRPLLDRMEVIEIPGYTNMEKQAIARQYLWPKQVR 274
56 -9.1803tlx_A mol:protein length:243 Adenylate kinase 2  ali model follow..  16  27...................................................................................................KPDGRYIFLGAPGSGK-----GTQSLNLKKSHCYCHLSTGDL---LREAAEKKTELGLKIKNIINEGKLVDDQMGFIPRNVKQAEDLNKLLQKNQTKLDGVFYFNVP----------DEVLVNRISGRLIHKP-----SGRIYHKI.............. 169
57 -9.1604kfr_A mol:protein length:212 Genome packaging NTPase B204  ali model follow..  15  1..................................................................................................MNPDDIVVLVGRKKSGKSYLIKHYFIPVLKAHKISYIIDDHNLLRSGSEYSKFGYNATSLSDIVSKQYVLIIDEA-HFKYKQKVTPAIDEALHANRHAGLGLILSTQRVYDLMPIVYKQ--ADLIIMFYTREPNELRWISK.................... 170
58 -9.1502fh5_B mol:protein length:214 Signal recognition particle receptor beta sub  ali model follow..  12  5...................................................................................................SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSHESLRFQLLDRFKS--VFVVDSAAFQREVKDVAEFLYQVLIDS-NSPSLLIACNKQ..................................................... 125
59 -9.1403b6e_A mol:protein length:216 Interferon-induced helicase C domain-containi  ali model follow..  13  47....................................................................................................EGKNIIICLPTGSGKTRVAVYI-VLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIIS-----------TAQILENSLLNLENGEDAGVQLS--------------DFSLIIIDE-CHHTN.......................... 175
60 -9.0704l15_A mol:protein length:334 Fidgetin-like protein 1  ali model follow..  17  90......................................................................................................KGVLLFGPPGTGKTMIGRCV---ASQCKATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSRSESE---HESSRRIKTEFLVQLDGVNTAPDERLLVLGATLDEAARRRFQKRLYI......................... 220
61 -9.0601nrj_B mol:protein length:218 Signal recognition particle receptor beta sub  ali model follow..  13  10...................................................................................................SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAIFMVDSTVDPKKLTTTAEFLVDILSSCENGIDILIACNKS..................................................... 130
62 -9.0603adb_A mol:protein length:259 L-seryl-tRNA(Sec) kinase  ali model follow..  14  8........................................................................................................IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFKYEEFIKKSTYRLIDSALKNYWVIVDDTNYYNSMRRD----LINIAKKYNKNYAIIYLKASLDVLIR--ERGEKIPNEVIKKMYEK............................ 136
63 -9.0101zuh_A mol:protein length:168 Shikimate kinase  ali model follow..  13  2......................................................................................................QHLVLIGFMGSGKSSLAQELG-----LALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMHENLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYE................ 137
64 -9.0002zam_A mol:protein length:444 Vacuolar protein sorting-associating protein  ali model follow..  22  168......................................................................................................RGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENEFLVQMVGVDNDGILVLGATNIPWV-----------LDSAIRRRFEKRIYI......................... 298

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.