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Query: gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVALast
1 -22.7001asu_A mol:protein length:162 AVIAN SARCOMA VIRUS INTEGRASE  ali model follow..  16  8.....................................................................................................................LGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVL-GRPKAIKTDN-------------GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKI................................................................................................ 120
2 -22.3001vsd_A mol:protein length:152 INTEGRASE  ali model follow..  17  2.................................................................................................................LREGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVL-GRPKAIKTDN-------------GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKI................................................................................................ 118
3 -22.0001cz9_A mol:protein length:162 AVIAN SARCOMA VIRUS INTEGRASE  ali model follow..  16  10.......................................................................................................................PLQIWQTNFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVL-GRPKAIKTDN-------------GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKI................................................................................................ 120
4 -21.2005cz1_A mol:protein length:169 integrase  ali model follow..  18  9.......................................................................................................................PRVLWQMDVTHVSEFGKLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYM-GIPQKIKTDN-------------APAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKA--------QLNKLQKAGKYYTPHHLLAHALFVL-NHVNMDNQGHTAAERH................................................ 158
5 -21.1003o4n_A mol:protein length:150 integrase  ali model follow..  16  6.....................................................................................................................LGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVL-GRPKAIKTDN-------------GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKI................................................................................................ 118
6 -20.6003jca_A mol:protein length:265 Integrase  ali model follow..  15  2...................................................................LESAQESHALHHQNAAALRFQ-FHITREQAREIVKPDWGHAPQLGVNPRGLKPRVLWQMDVTHVSEFGKLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYM-GIPQKIKTDN-------------APAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKA--------QLNKLQKAGKYYTPHHLLAHALFVL-NHVNMDNQGHTAAERHWGPI............................................ 211
7 -19.9004fw2_A mol:protein length:270 Integrase  ali model follow..  11  3.................................................................REAKDLHTALHIGPRALSKASNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVL-GRPKAIKTDN-------------GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKI--RVLAEGDGFMKRIPTSKQGELLAKAMYAL-NHKERGENTKTPIQKHWRPTV........................................... 217
8 -19.4003hpg_A mol:protein length:219 Integrase  ali model follow..  14  3............................................................................ENIPLAEEEHNKWHQDAVSLHLEFCDVCQENKMPSTLRGSNKRGIDHWQVDYTHYEDK----IILVWVETNSGLIYAERVKGETGQEFRVQTMKWYAMFA--PKSLQSDN-------------GPAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTL----------EKLIPMFNAFESALAGTLITL-NIKRKGGLGTSPMDIFIFNKEQQR........................................ 209
9 -18.9005ejk_A mol:protein length:270 Gag-Pro-Pol polyprotein  ali model follow..  13  3.................................................................REAKDLHTALHIGPRALSKASNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVM-GRPKAIKTDN-------------GSCFTSKSTREWMARWGIAHTTGIPGNSQGQAMVERANRMMKDKI................................................................................................ 167
10 -18.9004fw1_A mol:protein length:222 Integrase  ali model follow..  16  9.......................................................................................................................PLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVL-GRPKAIKTDN-------------GDAFTSKSTREWLARWGIAHTTGIPGNSQGQAMVCRANRLLKDKI................................................................................................ 119
11 -18.8001c0m_A mol:protein length:238 PROTEIN (INTEGRASE)  ali model follow..  13  9.......................................................................................................................PLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVL-GRPKAIKTDN-------------GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDR----IRVLAEGDGFMKRIPTSKGELLAKAMYALNHKERGENTKTPIQKHWRPTVLTE------------GPPVKIRIETGEWEKGWNVL........ 192
12 -18.4004fcy_A mol:protein length:529 Transposase  ali model follow..  12  34..WLPAVQAADEMLNQGISFATVAGHYQVSASTLRDKYYQVQKFAKGRGASRRNVHKSEFDEDAWQFLIA-RPEKPAFRKCYERLREHGWS-SRATAFRRIQQLHALMHLIPAQQRTVEAMQWINGDGYLHNGDVIRPKTWFWQDVKTRKIL-RCDVSENIDSIRLSFMDVVTRYGIPEDFHITDNTRGAANKWLTGGAPNRY-EDDPKGLFLLMGAKMHWTSVVAGKGWGQVERAFGVGGLEEYVDKHPALAGAYTGPNLKTLAEGVAMFNARTGRETEMCGGKLSFDDVFEREQKRMLLLPAEAVNVSRLKVGGSLKGAKNVYYNLMLAGVKKVVVR. 458
13 -17.3001c6v_A mol:protein length:164 PROTEIN (SIV INTEGRASE)  ali model follow..  17  8.......................................................................................................................DLGTWQMDCTHLEGK----IVIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGR--WPITHLHTDN-------------GANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQI----------DRIREQANSVETIVLMAVHCMNHKRRGGIGDMTPAERL................................................ 151
14 -17.0002lvs_A mol:protein length:105 Putative uncharacterized protein  ali model follow..  14  3.SVNDSLDIVEKLYKDGVPVKEIAKRSNNSMSTVYKALEKLEAMGRIKRRKGRYRQHRRLTEEELATIRELYLKGATVYEIARQL-------PESTIYYALKK............................................................................................................................................................................................................................................. 99
15 -16.6002itg_A mol:protein length:163 HUMAN IMMUNODEFICIENCY VIRUS-1 INTEGRASE  ali model follow..  14  8.......................................................................................................................SPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERI................................................ 151
16 -16.2001k6y_A mol:protein length:212 Integrase  ali model follow..  13  1...........................................................FLDGIDKAQEEHEKYHSNWRAM-----ASDFNLPPVVAKEIVASCDKQLKGEAMHGQVDCSPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 200
17 -16.0004pa1_A mol:protein length:151 Integrase  ali model follow..  12  6............................................................................................................................QMDCTHFDGK----IILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHN---TELQTDN-------------GPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWI----------QKFLPETTSLDNALSLAVHSLNFKRRGRIGGMAPYELLAQQES........................................... 149
18 -16.0004ojr_A mol:protein length:164 HIV-1 Integrase  ali model follow..  13  9.......................................................................................................................SPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTIHTDN-------------GSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKE.................................... 164
19 -15.9001b92_A mol:protein length:163 PROTEIN (INTEGRASE)  ali model follow..  12  7......................................................................................................................CSPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEFGIPYNPQSQAVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKE.................................... 163
20 -15.9004y1c_A mol:protein length:167 Integrase  ali model follow..  13  17............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDIQTKE.................................... 167
21 -15.9004tsx_A mol:protein length:163 Integrase  ali model follow..  15  13............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAETLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 151
22 -15.8004gvm_A mol:protein length:163 Gag-Pol polyprotein  ali model follow..  15  13............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKTACWWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 151
23 -15.6003av9_A mol:protein length:183 Integrase  ali model follow..  13  22.......................................................................................................................SPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDIQTKE.................................... 177
24 -15.6001u78_A mol:protein length:141 transposable element tc3 transposase  ali model follow..  7.LSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASN------SCKTARDIRNELQLSASKRTILNVIKRSGIVRQKLRPAPLLSADHKLKRLEFAK.................................................................................................................................................................................................................. 130
25 -15.5001biz_A mol:protein length:166 HIV-1 INTEGRASE  ali model follow..  13  16............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKE.................................... 166
26 -15.5003ao2_A mol:protein length:163 POL polyprotein  ali model follow..  13  13............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTGATVRAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDIQTKE.................................... 163
27 -15.4003zcm_A mol:protein length:167 HIV INTEGRASE  ali model follow..  15  11............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERI................................................ 149
28 -15.3003kkr_A mol:protein length:152 Integrase  ali model follow..  18  6............................................................................................................................QMDNTHWNKT----IIWVAVETNSGLVEAQVIPEETALQVALCILQLIQRY-TVL-HLHSDN-------------GPCFTAHRIENLCKYLGITKTTGIPYNPQSQGVVERAHRDLKDRL----------AAYQGDCETVEAALSLALVSL-NKKRGGIGGHTPYEIYLESEHTKYQ....................................... 152
29 -15.3004mq3_A mol:protein length:132 Integrase  ali model follow..  14  2......................................................................................................................SHMGIWQMDCTHFDGK----IILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAH-NVTE-LQTDN-------------GPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWI................................................................................................ 108
30 -15.2004lh4_A mol:protein length:182 Integrase  ali model follow..  14  26............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKE.................................... 176
31 -15.1001bis_A mol:protein length:166 HIV-1 INTEGRASE  ali model follow..  13  11.......................................................................................................................SPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACEWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQ....................................... 163
32 -15.0004e1m_A mol:protein length:166 HIV-1 Integrase  ali model follow..  13  7...................................................................................................................QVDCSPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKE.................................... 166
33 -14.9004nyf_A mol:protein length:168 Integrase  ali model follow..  15  20............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTIHTDN-------------GSNFTSATVKAACDWAGIKQEDGIPYNPQSQGVVESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 158
34 -14.9001biu_A mol:protein length:166 HIV-1 INTEGRASE  ali model follow..  14  11.......................................................................................................................SPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACEWGGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 154
35 -14.4003f9k_A mol:protein length:210 Integrase  ali model follow..  15  2...........................................................VLEKIEPAQEEHEKYHSNVKELSHK-----FGIPNLVARQIVNSCAQCQQKGEAIHGQNAELGTWQMDCTHLEGK----IIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRW-PIT-HLHTDN-------------GANFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQI----------SRIREQANTIETIVLMAVHCMNFKRRGGIGDMTPSERL................................................ 201
36 -14.2001ex4_A mol:protein length:239 INTEGRASE  ali model follow..  16  13............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTIHTDN-------------GSNFTGATVRAACDWAGIKQEDGIPYNPQSQGVVESMNKELKKII................................................................................................ 113
37 -13.7003dlr_A mol:protein length:202 Integrase  ali model follow..  16  16.......................................................................................................................PFDKFFIDYGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI--AIPKVIHSDQ-------------GAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLL-----------------KLLVGRPTKWYDLL-NNTYSPVLKYTPHQLLFGIDSNT......................................... 171
38 -13.6002x6n_A mol:protein length:200 INTEGRASE  ali model follow..  16  12.......................................................................................................................PFDKFFMDYGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVK-SLNVLTSI-AIPRVIHSDQ-------------GAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDMKRLL-----------------KLLVGRPTKWYDLL-NNTYSPVLKYTPHQLLFGIDSNT......................................... 167
39 -12.4001hcr_A mol:protein length:52 PROTEIN (HIN RECOMBINASE)  ali model follow..  24  6.INKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKR...................................................................................................................................................................................................................................................................................................... 50
40 -12.0003l2q_A mol:protein length:395 Integrase  ali model follow..  11  4........CNTKKPNLDAELDQLLQGHYIKGYPKQYTYFLEDGKVKVSRPEGVKIIPP--QSDRQKIVLQAHNLAHGREATLLKIANL-WPNMRKDVVKQLGRCQQCLITNASNKASGPPFDKFFIDYGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSL-NVLTSI-AIPKVIHSDQ-------------GAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLL-----------------KLLVGRPTKWYDLL-NNTYSPVLKYTPHQLLFGIDSNT......................................... 279
41 -12.0004bac_A mol:protein length:396 INTEGRASE  ali model follow..  11  1....GSHMCNTKKPNLDAELDQLLQGHYIKGYPKQYTYFLEDGKVKVSRPEGVKIIPP--QSDRQKIVLQAHNLAHGREATLLKIANL-WPNMRKDVVKQLGRCQQCLITNASNKASGPPFDKFFIDYGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSL-NVLTSI-AIPKVIHSDQ-------------GAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLL-----------------KLLVGRPTKWYDLL-NNTYSPVLKYTPHQLLFGIDSNT......................................... 280
42 -10.9002elh_A mol:protein length:87 CG11849-PA  ali model follow..  16  23.LTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRFMSRQSATDNL............................................................................................................................................................................................................................................................................................ 77
43 -10.7001hlv_A mol:protein length:131 MAJOR CENTROMERE AUTOANTIGEN B  ali model follow..  20  7QLTFREKSRIIQEVEENPDLREIARRFNIPPSTLSTILKNKRAVASTCRKTNKLSPYDKLEGLLIAWFQQIRAAGLPALRIAEELGMDDFTASNGWLDRFRRR............................................................................................................................................................................................................................................. 129
44 -10.6003vwb_A mol:protein length:143 Virulence regulon transcriptional activator v  ali model follow..  21  22...RELGIGLNFLKVSGMSYKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASELNNDYKILFNYYKGLEKANESLSSTLPILKEE............................................................................................................................................................................................................................................................ 107
45 -10.0001nr3_A mol:protein length:122 DNA-binding protein tfx  ali model follow..  14  1............MRERGWSQKKIARELKTTRQNVSAI--ERKAMENIEKSRNTLDFVKSLKSPVRILCRRGDTLDEIIKRLLEESNKEGIHVIHDSIT.................................................................................................................................................................................................................................................. 84
46 -9.5602m8e_A mol:protein length:57 SLEEPING BEAUTY TRANSPOSASE  ali model follow..  28  9.ISQDLRKKIVDLHKSGSSLGAISKRLKVPRSSVQTIVRK............................................................................................................................................................................................................................................................................................................ 47
47 -9.2901zx4_A mol:protein length:192 Plasmid Partition par B protein  ali model follow..  21  8HSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTSDYKTLCAVGDEMGNKNLEFDQLIQNISPE............................................................................................................................................................................................................................................................ 96

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.