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anford Burnham Prebys Medical Discovery Institute
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Query: gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst MAHVTSVTLGEHLTGFVGEMIQSGRYGNISEVLRDALRLMEAREQRVQHVRDMVLAGTNVPVSHRLMDEIFSAAVKDTSVLast
1 -5.540sp|Q02818|NUCB1_HUMAN Nucleobindin-1 OS=Homo sapiens GN=NUCB1 PE=1 SV=4 (Range: 49-194)  ali follow..  28  22..........EKLQAANAEDIKSGKLSRELDFVSHHVRLDELKRQEVSRLRMLLKA........................ 69
2 -5.520sp|P80303|NUCB2_HUMAN Nucleobindin-2 OS=Homo sapiens GN=NUCB2 PE=1 SV=2 (Range: 52-167)  ali follow..  30  22..........EKLQKADIEEIKSGRLSKELDLVSHHVRLDELKRQEVGRLRMLIKA........................ 69
3 -5.390sp|O75923|DYSF_HUMAN Dysferlin OS=Homo sapiens GN=DYSF PE=1 SV=1 (Range: 581-693)  ali follow..  22  15FAAFYSATMLQDVDDAIQFEVSIGNYGNKFD................................................. 45
4 -5.300sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2 (Range: 913-1002)  ali follow..  12  25MTFLWNEKYGHKLDSIEGKQLDYFSEPASLKEARCLIWLLEEHRDKFPALHSALDE........................ 80
5 -5.200sp|Q14123|PDE1C_HUMAN Calcium/calmodulin-dependent 3`,5`-cyclic nucleotide phosphodiesterase 1C OS=Homo sapiens GN=PDE1C PE=1 SV=1 (Range: 1-70)  ali follow..  22  36........................KYKKTSQRLRSLVKQLERGEASVVDLKKNLE......................... 66
6 -5.140sp|Q9UQ03|COR2B_HUMAN Coronin-2B OS=Homo sapiens GN=CORO2B PE=2 SV=4 (Range: 404-480)  ali follow..  39.........................FFRQQDEIRRLKEELAQKDIRIRQLQLELKN........................ 69
7 -5.130sp|Q12769|NU160_HUMAN Nuclear pore complex protein Nup160 OS=Homo sapiens GN=NUP160 PE=1 SV=3 (Range: 959-1146)  ali follow..  111RARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGN......................... 165
8 -4.970sp|Q9GZV8|PRD14_HUMAN PR domain zinc finger protein 14 OS=Homo sapiens GN=PRDM14 PE=2 SV=1 (Range: 21-114)  ali follow..  10  1.......SSPQNLAAYYTPFPSYGHYRNSLATVEEDFQPFRQLEAAASAAPAMPPFPFRMAPP................. 56
9 -4.860sp|C9J069|CI172_HUMAN Uncharacterized protein C9orf172 OS=Homo sapiens GN=C9orf172 PE=3 SV=1 (Range: 711-817)  ali follow..  17  2.........................YGRVGSVCRHVLQFCRDSGPVHRAFSRIARVGFLS.................... 36
10 -4.710sp|Q9HCM3|K1549_HUMAN UPF0606 protein KIAA1549 OS=Homo sapiens GN=KIAA1549 PE=1 SV=4 (Range: 924-996)  ali follow..  11  25.....DITVPDAY--LITTVLARRAQEYIITAIKEVLRIHFNRAVELKVYE............................. 69

FFAS is supported by the NIH grant R01-GM087218-01
1 1 9 1 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.