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Query: gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKRSPVLRNAPSINFDDAKPAISNAEPSVSAPAVSQLASRVSGMKGNTIVLPVCGRNVAFTLKVIAAPDVESKTIVFSGNERNQALLSETSLDDLIPSFLTSGQQIPAFAREHNGNIEVADGSRRRKAAILTGSDYKVLVGNLNDEQMLWLSQIANEYRPTSAYERGLRYAQRLISEFEGNISKLAEAEHLSRKIIQRCIKTAGLPLKTIQLFANPNELSARSGEALSKAYENNVDTLKRVTHKIMKQKQEGRQFTTEELIVLLMPERKQPENIHKKSFGKNIEAKYSKDNVSFYLKSVPESLVKQIEELLNTYAKEHSLLast
1 -3.940tr|Q5T5A0|Q5T5A0_HUMAN Chromosome 9 open reading frame 24 OS=Homo sapiens GN=C9orf24 PE=2 SV=1 (Range: 1-164)  ali follow..  12  5.....................................................................VRGMPLECPPRPERLNAYEREVMVNMLNSLSRNGCVDPLPGRLPFHGYESACSGRHY----LRGMDYYASGAPCTDRRLRPWCREQPTVRCVPPYEHRPGMQCAVTTPPPSYYPYPNLRWDTSHFKKSGGPQRNNYPEFVSETYPD......................................................................................................... 160
2 -3.810sp|Q13370|PDE3B_HUMAN cGMP-inhibited 3`,5`-cyclic phosphodiesterase B OS=Homo sapiens GN=PDE3B PE=1 SV=2 (Range: 314-388)  ali follow..  17  5.....................................................................................................................................................SLPCISREQMILWDWDLKQWYKPHYQNSGGGNGVDLS-VLNEARNMVSDLLTDPSLPPQVISSLRSISSL..................................................................................................... 73
3 -3.550sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1 (Range: 899-1057)  ali follow..  10  2...............................................................................................................................................................................HERALPIQLTVQALDMPEEAIETLLCYLELHPHLATTYTHCRLNCPGGPAQLQALAHRCPPLAVCLAQQLPEDPGQGSSWELASVRRALCQLQWDHEPRTGVRRGTGVLVEFSELAFHLRSGDLTAEEKDQICDFL......... 157
4 -3.460tr|B7ZBX6|B7ZBX6_HUMAN Coiled-coil and C2 domain containing 2B (Fragment) OS=Homo sapiens GN=CC2D2B PE=4 SV=1 (Range: 1-195)  ali follow..  10  101...........................................................................................................................................................KFLDQTEVLQRAQIFKKNCKAMFPNRRVTTVFNDEGIQFLVTRYIKALNPPQQLLDIFLHNSNATFDLIARFVSLIPFVPNTP.................................................................................. 184
5 -3.460sp|C9J069|CI172_HUMAN Uncharacterized protein C9orf172 OS=Homo sapiens GN=C9orf172 PE=3 SV=1 (Range: 869-976)  ali follow..  13  17.............................................................................DQDGEAGRRAREVAFIHIQRELRLRGHEFPRVYEQL----EFVEANRRFTPTTITGRPFMCMIMAASEPRALDWVASANLLDD................................................................................................................................................................ 106
6 -3.330sp|P0C7X1|TBC3H_HUMAN TBC1 domain family member 3H OS=Homo sapiens GN=TBC1D3H PE=2 SV=1 (Range: 396-502)  ali follow..  11  18.................................................STPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAE........................................................................................................................................................................................... 101
7 -3.330sp|Q6DHY5|TBC3G_HUMAN TBC1 domain family member 3G OS=Homo sapiens GN=TBC1D3G PE=2 SV=2 (Range: 396-502)  ali follow..  11  18.................................................STPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAE........................................................................................................................................................................................... 101
8 -3.330sp|A6NDS4|TBC3B_HUMAN TBC1 domain family member 3B OS=Homo sapiens GN=TBC1D3B PE=2 SV=1 (Range: 396-502)  ali follow..  11  18.................................................STPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAE........................................................................................................................................................................................... 101
9 -3.330sp|A6NH17|TBC3L_HUMAN TBC1 domain family member 3-like protein LOC729837 OS=Homo sapiens PE=3 SV=1 (Range: 396-502)  ali follow..  11  18.................................................STPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAE........................................................................................................................................................................................... 101
10 -3.330sp|A6NER0|TBC3F_HUMAN TBC1 domain family member 3F OS=Homo sapiens GN=TBC1D3F PE=2 SV=2 (Range: 396-502)  ali follow..  11  18.................................................STPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAE........................................................................................................................................................................................... 101

FFAS is supported by the NIH grant R01-GM087218-01
9 8 9 2 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.