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anford Burnham Prebys Medical Discovery Institute
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Query: gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst MAHVTSVTLGEHLTGFVGEMIQSGRYGNISEVLRDALRLMEAREQRVQHVRDMVLAGTNVPVSHRLMDEIFSAAVKDTSVLast
1 -36.200PD03693I MMAG_12JAN01_CONTIG3876_REVISED_GENE3789 366510 Purified-2006-04-03  ali follow..  30  2..PTRNVVLTDHQSELIERLVTSGRYQNASEVLREGLRLIEVRDMRLETLRAAIQVGIDDIEAGRYTVLRGERELKS... 80
2 -36.100PK6296A YP_425791.1 389184 Crystal|NMR-2008-06-18  ali follow..  20  2....PNIHLTDSMRDYIDGQIRSGAYANLSEVVRAGIRLLMEKDGQFYALKAELEAAATAAEAGAFAEFDPQAFEPDAF. 78
3 -34.900PL6906A NP_386785.1 401978 Crystal|NMR-2009-10-09  ali follow..  32  2QTEKLSISLPVDMARMVRRRVEDGAYASNSEVIREALRLWQQREQRLDAIRASLDAAANDPARHGSAE............ 73
4 -11.500RH20322A NP_394079.1 416028 Selected-2009-12-04  ali follow..  16  31.DVKLTLRISEEDINEIDNFLAYPEFGSRSEFIRHAVM.......................................... 68
5 -7.620RH20465A YP_877348.1 416340 Selected-2009-12-04  ali follow..  10  1MSSSKKFKITKDLINIIINRKSIKKYKKNSKLIKVSLIQYIKVKNKLDKFKQGYLE........................ 62
6 -6.960FR14830A NP_070573.1 392653 Purified-2008-10-15  ali follow..  12  4.PVRVTIALDDESVKIFEE-LKKELGLSQSEIIRRVIKFYRDYKFLEKFDREKVST........................ 57
7 -6.770FP13102A NP_147356.1 383377 Purified-2007-11-21  ali follow..  21  2.......................GLYASVAEAVREAVRSMLQSMDLRSLALDLYVHRGST.................... 38
8 -5.960TM1634 TM1634 283491 Crystal|NMR-2007-03-16  ali follow..  18  84..................DLFETANYGEALVFFEKALNLSDNEEIKLEECRKKLA......................... 126
9 -5.830SC.B21168B ZP_02026987.1 428894 Selected-2013-01-04  ali follow..  20  1MERGVKVQIED-----LKKYILENAI----RWSAHCLERMQERDISRADVKKCVLEG....................... 48
10 -5.590WT20663C.SMAD9 BC011559 422579 Purified-2011-05-28  ali follow..  1MHSTTPISSLFSFTSPAVKRLLGWKQGDEEEAVDSLVKKLKKKKGAMDELERALSCP....................... 62

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.