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Query: gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPELast
1 -24.800NT12373A YP_804196.1 378766 Purified-2007-10-16  ali follow..  20  97...............................................KQTHLLEQERHRKALVKSISMP--KLIRHASLEGYYQEPERTDALAKTLAFVNEHKGLYLTGSFGVGKTYLMGAMGNALADEGYSTTIVHFPSLAVELKNAIGSSNTIQTKIDAIKKAPILVIDDIGADSISSIRDDVLGVILEYRMEELPTFFTSNFSMDQLEREHL-EPLKAKRLMERIKFLSEEVSMTGKNHR................ 307
2 -23.800NT12373G NP_346149.1 378779 Crystal|NMR-2008-05-30  ali follow..  17  92...............................................PELIAAEKEAAIKNRLKLINLP--ASLKKASLAQVDLDDLGRLPVFEKLQYPAIRKGLYLYGDFGVGKSFMVAALAHDSEKRGVSSTLLHYPSFVIDVKNAISDGNVKTLVDE-IKLSEVLILDDIGAEQSTVVRDEILQVILQYRMENLPTFFTSNFNFEDLEKHFA-ETWEARRVMERIRYLAEETRLEGVNRR................ 298
3 -16.900NT12250A SAMA_14OCT04_CONTIG53_REVISED_GENE1514 378832 PDB-2007-12-17  ali follow..  16  18.................................................................VHLPDDETFTSY---YPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS----------ISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAERGSLIVSASASPMEWGLTYQMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR.......... 207
4 -16.700NT12250E SDEN_20JUL04_CONTIG64_REVISED_GENE2562 378843 Crystal|NMR-2007-11-10  ali follow..  15  13.................................................................VYLPDDETFQSY---YPASGNDELIQKLQASAQGGLSSSLYIYGPVKSGRTHLMHAACALANDKDRRTLYIPLGIHAS----------ISPALFEGLESLELICIDDIDAIAGHPIWEEAIFHLYNRIAEHKDLIVSGKASPTEWGLIYQADDEKLLALQRRAAMRGLQLSDEVGRFLLTRMAR.......... 202
5 -16.700NT12250D SBAL_17SEP04_CONTIG213_REVISED_GENE1526 378842 Crystal|NMR-2007-11-10  ali follow..  16  13.................................................................VHLPDDETFNSY---YPAAGNDELIQKLRANAEGQGEAAIYLWGPVKSGRTHLMHAACAHANEVERRSFYIPLGIHAS----------ISTALLEGLEQLDLVCIDDVDAIAGHPVWEEAIFDLYNRVAEHKNLVVSGSSSPADWGLNYQADDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR.......... 202
6 -16.600MJ11611A YP_383714.1 402955 Purified-2009-10-29  ali follow..  19  44........................................................................................................LYLHGPSGSGKTHLLMAIGAHFSARLSSVPCISFKDVDEVYGGEYPAEAVSK-LAERFRNAPALLVDDLHLIPDQQAVRVELWQLFNDFYQAGRPIAITGISRLLWGRVDISDDDSRRLIMKK................................ 184
7 -16.400FM12250C NP_249638.1 377756 Purified-2007-08-22  ali follow..  16  10.................................................................VRLRDDATFANY-YPGANAAALGYVERLCEAEAGWAESLIYLWGHDGVGRSHLLQAACLRFEQFEERTIYLPMADLVQYGPE----------IFDDLEQCELVCIDDLDVLVGKREWEEGLFHLFNRLRDTGRRLLLAAKSRLTMALIFQSDEDKLRALQLRASRRGLHLTDEVGRFILNRGSR.......... 200
8 -16.300NT12250F SHEW_20DEC04_CONTIG131_REVISED_GENE837 378844 Purified-2007-11-19  ali follow..  16  13.................................................................VYLPDDETFNSY---YPAAGNDELILSLQASAEGRANKAVYLWGPVKAGRTHLMHATCARANELNRSSFYLPLGIHAS----------ISTELLEGLEQLDLVCIDDVDAIAGHPLWEEALFDLYNRVAEHKRLVVSASATASDWGLTYQADEEKLAALQRRAAMRGLQLPEDVGRFLLNRLAR.......... 202
9 -15.400NT12250C NP_873299.1 378841 Purified-2009-04-13  ali follow..  11  7.................................................................IHQIDDETLDSF----YSENSLLLLDSLRQNFIDVQQPFFYIWGAKSCGKSHLLKAVSNQYLLSQKTASYIPLTK----------SHYFSPLVLDNIEQMDVICLDDLQAIANNEEWELAIFDLFNKIREQQSLLISANCSPHQWGEVYQTDDQKIVILQRKAYQKGIELSEEVANFLLKRLDR.......... 202
10 -14.900FP12958A DHAF_12NOV03_CONTIG917_REVISED_GENE4036 382838 Purified-2007-12-03  ali follow..  17  27........................................................................................................TLLYGPEGVGKSTLLVKCC-QRLKEKKTILYIDAQDFVKNYAFAAQEGTLSQ-FRLRLRTPGVLIMDHIEVLKGKTRSIEEFYHTYEALFQRNGIICGFRGD-----------PSQLGFLGEKLSSRLRVVPILQPTPEDM.............. 158
11 -12.300SP17258A ZP_03458243.1 407566 Purified-2010-09-29  ali follow..  16  1.........................................................................................MLNLRVSSKKQAKIKLALQGCAGSGKTYSALLLAYGLTKDWTKIAIIDSEN-VLPLQDNFTPEAYIEAVKVC-AKMEVIIIDSISQC----------WDNLLEYHANLQ-----GNSFTNWQKITPRINAFMQKILQSPSHVICTMRCKQD................... 149
12 -12.300C.LS21333A NP_418828.1 430427 Purified-2014-07-08  ali follow..  20  132..........................................................................ERFTFETFVPGPANEFAHAVARRIANWADGVLFHGPYGFGKTHLLNALAWEAMRNEKRVVYLTAERFLSTFVRAVMDRQTAA-FKEELRAADLLIIDDVHFIAGKQSTQEELFHTLTALVGEGGVVFSADRPPSA-----------MTEMDAHLRSHLSVCGLEPADRNLR.............. 300
13 -12.100C.LS21352A NP_420519.1 430471 Selected-2011-09-02  ali follow..  18  44........................................................................................................LVLVGPAGCGKSHLARAWAAAAGAVVVEAANPDAASVDLS----------------ALRGRAVLVEDADRRAQGAAVSDEALFHILNMAGVDGTVLLTGRTAPLTWSAEVADDAVLEAVLRRAFAAAWWKPEPDLYPYLLARLPRS......... 191
14 -11.900TM0036 TM0036 281917 Purified-2001-08-24  ali follow..  18  2.......................................................................................................KILITGRPGVGKTTLIKKL--GEKRIGFKIITLDGEEGILARTDLPSPYRVGKYLERAFQEKDLIIVDEIGKM---ELLSRKFREVVEKIFDSEKDVIAT--------------KKSSDPFVEKIKNRVVIFELNEKN.................. 154
15 -11.500TM0370 TM0370 282245 Purified-2001-02-21  ali follow..  14  31..................................................................................................IPERNIVLISGGPGTGKTIFSQQFIWNGLQMGEPGIYVALEEHPVQVKKNMEVRELAEVLKRAVRQAKRVVIDSVTTLYITKPAMSIIFQLKRILSGLGTSLFVSQVSVTEKGFGGPGVEHGVDGIIGELKRSLIVWKMRGTSH................. 228
16 -11.300MJ0370B YP_137362.1 403011 Purified-2009-10-17  ali follow..  15  27..................................................................................................LLPNRLYVVSGPPGSGKTTFCSQFITQGVKEGETCLYVTMHETKTELMQDMAGGGLTNRLVAYIRQIQRVVIDSTLLQHFMADVEDEITGFLSALKQTDATTLLISEMTDP--SSYSDEHYLAHGVVGSMTRGVQVIKMRGTAI................. 213
17 -11.200PG9677D MMAG_12JAN01_CONTIG3763_REVISED_GENE1064 372762 Crystal|NMR-2007-07-19  ali follow..  17  64...............................................................................................LAGFAFNRRVMVQGYHGTGKSQVAARLNWPCIRVNLDSH-VSRIDLIGKDAIVVKDGKREGMLPWALQHPCALVFDEYDAG--RPDVMFVIQRVLEVEHAAFRLFATANTV-GDTTGLYHGTQQINQGQMDRW............................... 217
18 -10.700PG9677A YP_498161.1 372465 Crystal|NMR-2007-07-20  ali follow..  19  62...............................................................................................LAGFAYNRRVMVQGYHGTGKSQVAARLNWPCIRINLDAH-ISRIDLVGRDAIVLRDGLQVTELPWALQTPTALVFDEYDAG--RPDVMFVIQRVLETENKFFRLFATANTV-GDTSGLYHGTQAINQGQMDRW............................... 215
19 -10.600TM0930 TM0930 282799 Purified-2001-04-19  ali follow..  20  14..................................................................................................MMAGEIPLLVGHFGVGKTDIARDI---ARETERKLIILVLSQMLPARTEEKTVFLKPDWWPE--SGDTILFLDEINRAHRSVRNA--IMQLLVDR-EGTWIMAAMNPPEEEYD---QADLITDPAFISRFFI............................. 149
20 -10.500FP9077A NP_389821.1 382988 Crystal|NMR-2007-12-20  ali follow..  21  62..................................................................................................LAMGKNVLLKGPTGSGKTKLAETLSSYFHKPMHSVNCLDAEALVGYKTIENQSGQVSGPVTKAMKEGHFLYIDEINMA--KPETLPILNGVLDYRKSGFGVIAAINEG-------YVGTVPLNEALKNRFV.............................. 205
21 -10.100PK9077F NP_764647.1 388971 Crystal|NMR-2010-01-07  ali follow..  20  21..................................................................................................FQLNKNILLKGPTGSGKTKLAETLSNVMKLPMHQVNCLDTESLLGFKTIHTNEEGIDGPVIKAMKEGHILYIDEINMA--KPETLPILNGVLDYRNPYTGEVIKAAPGFAAINEGYVGTLPMNEALKNRFI.............................. 165
22 -10.000CL6246A 10639230 359669 Crystal|NMR-2006-01-21  ali follow..  11  29..................................................................................................FDRNDNVVVRGNNFSQKRSFIYSFIKKSANSGIGVVLVDFDFPSEGIMADLVRPSVLKQITSTVQKMDVFVMLSATRYAKDQNTDRFFVQLINMNRKRSLVSIVPEDRSEWFAYLMDSALHFRNDGDRDYLRVLTLKRIRTKEWV................ 218
23 -9.950PG9811A YP_295246.1 372212 Crystal|NMR-2007-02-25  ali follow..  21  38..................................................................................................RTLQRPLLIKGEPGTGKTMLAEEVAAALGMPLLQWHIKSTTKAQQGLYEYDAVSRLKGVLWQAFEADEVLLIDEID--KADIEFPNDLLRELDKAKHRPLVIITSN-----------NEKELPDAFLRRCFFH............................ 190
24 -9.900PK9809A YP_001089554.1 389036 Purified-2008-05-14  ali follow..  17  14..................................................................................................LSTGEVPLIVGESGIGKTALANKLGLPTIESYVGVNSNGYKTEKKTTVYAVHNKLREIDEEISKSKTVLLFIDEINRCEHTVQQE--LMNLILNR-DDVKILAAMNPSSKYGSDFDYQVVDMDAAQENRFVW............................. 172
25 -9.620MJ8919A YP_351948.1 403413 Purified-2009-09-04  ali follow..  15  61VDLARSQRLVEATGTLHATSGNEMGYQLTDQGKARALDALSQSEYYGAMPVPLDRYRLQVERQSVRHIKLTRAQLTAAMGHLIL-PDELLDHLGPA--VTSGRSILMYGPPGNGKSSISNGIRDALGDRIYVPRALEYSGQVITVYDPIVHRSAESAVDDPTSLRRIFIVDDLG--RQAEPPQKLVNRWIVPLEENRDVIFSTNFH----------NEIFDGAALRRIFFKIKVDGPSQENFL................ 356
26 -9.550PK9077A NP_841941.1 389815 Crystal|NMR-2008-06-18  ali follow..  17  30..................................................................................................YSVRMPMMLKGPTGCGKTRFVEYMAWKLGKPLITVA-MTASDLVGRFLLDAQGTRQDGPLTTAARYGAICYLDEVVEA--RQDTTVVIHPLTDNRLEKKGELVGAHPDFQLVISYNPGYQSLMKDLKQSTKQRFGALDFN..................... 175
27 -9.460TM1465 TM1465 283323 Crystal|NMR-2003-06-13  ali follow..  15  5........................................................................................................IHVYTGNGKGKTTAALGLATRAACAGLKVFFGQFLKFIVGNPSEEQIKKAKSGLADAKEKYDVVVLDELCVIHLGLFSKEEIEDLLNVKPENVELVITGRYA-------------------EWLIEKADLVT---EMKEVKHYYQKGVVARKGIE 169
28 -9.310PS05673 YP_459507.1 376551 Crystal|NMR-2009-05-09  ali follow..  15  1............................MADQGDPLARIADALERIAPAPSDTNWLAHPAYAWDGASGRPIAMIDAPGFDQLRGIDRQKAAVAETIARHAKAHDMLLWGARGMGKSALVRAATVEKQAEGLPLALVQVPALFAQIANLDRR---------------LILVDDLGFGADESAALRRLRSFIEPRPDNVRLAVTANRRADTADAMHESDEL-AMALADRFGLAIGFHTASQDDY................. 221
29 -9.280TM0907 TM0907 282776 Purified-2001-04-12  ali follow..  12  104.............................EKRQTLPEGLSKILYGMEKQEILPEIRYKLIDFLKMK----FGDLDPNSNETFKILSEQFVNLVKTNAPDFKNAKVLFVGTTGVGKT-LAKLAARFKIDEKKRVAILTLDTYAEQLKIAYTPKEAEYEMMA-LKDYDIVLVDTAGRSHQNDLQMSELRALSEAVKPITFLVLSMNYKLDDMKRIVER-THIILTKMDETSVYGTFVNI...................... 328
30 -9.260TM1507 TM1507 283364 Purified-2001-10-09  ali follow..  20  114....................................................................................VKPKTLGQKKYLEAVEKNDVVFVIGPAGTGKTYLAVAVALDYLKMGKVNRIILTRPAVEA-KLGYLPGDLSEKVEPYLRPLYDAIIDITSPDKFNSYRERGIIEIVPLAYMRGR---TLNNSFIILDEAQNTTYQQMKMFLTRLGFNSKAV-ITGDITQV............... 270
31 -9.060FP12868A YP_001635867.1 382523 Crystal|NMR-2007-12-20  ali follow..  16  1..................................................................................................MNTFPAVLIGGPPHSGKSVLTYLLTQYLRQRGIEHYVLRACP-LLRQKGAFDRTFVDRVCRDIEQRHLPLLVDVGGRPTLDQ-------ERIIQRCTHAIVLSATPQGMDEWRNRVEQYGLIIVAELHSELHGSDQIEVEKPVLR................ 153

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.