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anford Burnham Prebys Medical Discovery Institute
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Query: gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst MAHVTSVTLGEHLTGFVGEMIQSGRYGNISEVLRDALRLMEAREQRVQHVRDMVLAGTNVPVSHRLMDEIFSAAVKDTSVLast
1 -4.130HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  22  39..SRHSVWLSDDVWQEVDAFYKLDNCPIRNEFAEKALRHAERTGAYLPRALQGVLEGTLGVFGERLGRLLLKLAVE.... 118
2 -4.120PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  20  220.............................YEIFAIGVRMREENQ.................................... 234
3 -3.620PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  267.............ETLARVYVEQKNFSKAKQAYRILSLKYPEKSGQIRAIEKLQEN........................ 313
4 -3.550PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  1MNKTVNINLANML------HIDENAYQKLLRYVKRSFAGTAGSDEIIADIEARIAE........................ 54
5 -3.070PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  188.....DVPYFDAGKGALEGEFTP-HYTRQDSIYMDLHDELRAAVDQFDASQPTFGGA....................... 238
6 -3.040PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali follow..  17  185LRNERDVTAREAYRRKSAEADIDGLF--MRDIIREKVTNDDPR..................................... 225
7 -2.700HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  14  3MTDNNDDVLVKKFFSENRIDVPDDGFS------RRVMRRLPDRTRRISRLWTAV.......................... 50
8 -2.610HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  11  85.............HSLTYSRIQRISTTEYIFSLKDWIDKLAQRAAVLSLHREKLYDATAYYRCQPVCEYYIFTLRR.... 147
9 -2.600HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024;  ali follow..  86RMEKYGISSEKKIESAIRIVGNENPYHPIRDYLNGL............................................ 121
10 -2.380HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;  ali follow..  21  59.....TLSIPGWLNDAAESA-------NFSSVLQKGLK.......................................... 86

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.