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Query: gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHTVLast
1 -7.040HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  10..................................................................................................................ARTATEKLEMRGQSVTVEN---GKTVTDGFEKVSNNVNDFISSDKRNFFQKLADVFVLVIGFILKFFIILAGIFLLPPLVLVVFILVVVTFALL................................................................................................................................................................................................. 102
2 -5.660PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  13  114.................................................................................................................VSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQYKYQLKQEKRHQK.................................................................................................................................................................................................................................................. 159
3 -4.490PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]  ali follow..  1.............................................................................................................LTETQFKVQAEQQRL--EAVTAQVADVEQSLEKTKAAAEKQKKKLEALQK.................................................................................................................................................................................................................................................. 48
4 -4.100PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876;  ali follow..  10  83...........................................................................................................VAVNHVVELTAEEKAEARQNAIRQYQDEEVRRLQNRNKPRTATKATVQEVQQPSLFD--LG......................................................................................................................................................................................................................................... 141
5 -4.070HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  36.....................................................................................................................STKTYEERIRALEKKEQESIEATKKLIAQRKELEKRKKAEESKKRTHRLCQ-IGGAVESVLG.............................................................................................................................................................................................................................. 96
6 -3.720PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  10  1MTLLGD--------KTASPYDTGTPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAGLKLHGEYQGSGFTEPKYIARRGDGQVVQLSRLLHLVASSVDGSRDIETIAHRVSGRFGRESADNVRYLIEQKLDPLGVTVPEGREEEDISAPRSDNERRVATIAGALAWLHRPVVVLAVLAGIAVLDVWLFAFFGAITPVLEVL..................................................................................................................................................................................................... 209
7 -3.680HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  1................................................................................................................MAKPKNLEQLRAEKEQVETQEQHKLKRLENRKKYLEKGERQKRTHRLGGTIESLA.......................................................................................................................................................................................................................................... 61
8 -3.670PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  11  27.......................................................................................................DELEKRIERIRREVEQEEQAELDG--QSSSHDYSGYRPRIRGTFVEGTQHLKERQLQGETQSTRSGRTLRTLALLIAVCLLS........................................................................................................................................................................................................................ 106
9 -3.540HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  15  3.........................................................................................................................................................................EYILREIFLSVIAFLAGAGVSAGVFAFVL-VIGVVPRILRCSRIENIILIENVMICGVVAGNIPVSNICGNIIIAIYGLCVGIFVGCIAVALAEILHTFPIIYKRMKLRAGLGIIVISMA................................................................................................................ 139
10 -3.520PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  45......................................................................................................ISGAGTLIMSTSTRVGRDRVRGLTSRFKQLVSAEGQNEPLAREEKRLIIRQLPRLSRRTRF-ALQAFYTSVALLVLTSILLGLDLVALGGSVSLAYGALLLSYEA.................................................................................................................................................................................................. 165

FFAS is supported by the NIH grant R01-GM087218-01
9 8 9 2 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.