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Query: gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHTVLast
1 -11.900sp|Q9BWW8|APOL6_HUMAN Apolipoprotein L6 OS=Homo sapiens GN=APOL6 PE=2 SV=1  ali follow..  29...................................................................................................................ELQDGDLSPEEKIFLREFPRLKEDLKGNIDKLRALADDIDKTHKKFTKANMVA-VMSLLGLALAPATGGGSLLLSTAGQGLTAAGVTSIVSGTLERSKNKEAQARAEDILPTYDQEDREDEEEKADYVTAAGKIIYNLRNTLKYAKKNVRAFWKLRANPRLANATKRLLTTGQVSSRSRVQVQKAFAGTTLAMTKNARVLGGVMSALSKEWKHLKEGARTKFAEELRAKALELERKLTELTQLYKSLQQKVRSRARGVGKDLTGTCETEAYWKELREHVWMWLW.. 329
2 -11.700sp|Q9BPW4|APOL4_HUMAN(removed signalp:1-21) Apolipoprotein L4 OS=Homo sapiens GN=APOL4 PE=2 SV=3  ali follow..  78.......................................................................................................................QKEQQFREWFLKEFPQIRWKIQESIERLRVIANEIEKVHRGCVIANVVS-ILSVIGVMLAPFTAGLSLSITAAGVGLIASATAGIASSIVENTYTRSAELTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTLRRSKATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNLGKATSGVLVVLDVVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKA..................................... 329
3 -11.300sp|Q9BQE5|APOL2_HUMAN Apolipoprotein L2 OS=Homo sapiens GN=APOL2 PE=1 SV=1  ali follow..  72.......................................................................................................................DKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVTSGILTLLGLGLAPFTEGISFVLLDTGMGLAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHIIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGLAYESKHLLEGAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ................................. 337
4 -11.200sp|O95236|APOL3_HUMAN Apolipoprotein L3 OS=Homo sapiens GN=APOL3 PE=2 SV=3  ali follow..  14  119.....................................................................................................EADALYEALKKLRTYAAIEDEYVQQKDEQFREPQVKRKIQESIEKLRALANGIEEVHRGCTISNVASGIMSLAGLVLAPFTAGTSLALTAAGVGLAASAVTGITTSIVEHSYTSSAEAEASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTTWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVYESKHLHEGAKSASAEELRRQAQELEENLMELTQIYQRLNPCHTH................................. 402
5 -10.800sp|O14791|APOL1_HUMAN(removed signalp:1-27) Apolipoprotein L1 OS=Homo sapiens GN=APOL1 PE=1 SV=5  ali follow..  80.....................................................................................................EADELRKALDNLARQMIMKDKNWHDKGQQYRNPRLKSELEDNIRRLRALADGVQKVHKGTTIANVSSGILTLVGMGLAPFTEGGSLVLLEPGMELITAALTGITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGKDI--RALRRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEMSRGVKLTDVAPVSFF-------------LVLDVVYLVYESKHLHE--SETAEELKKVAQELEEKLNILNNNYKILQADQE......... 370
6 -9.250sp|Q9BWW9|APOL5_HUMAN Apolipoprotein L5 OS=Homo sapiens GN=APOL5 PE=1 SV=1  ali follow..  93.......................................................................................................................GNLSEEEKLFLSYFPLHKFELEQNIKELNTLADQVDTTHELLTKTSLVSGVMNILGLALAPVTAGGSLMLSATGTGLAAAITNIVTNVLENRSNSAARDKSHEAFGGINWSEIEAAGFCVNKCVKAIQGIKDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQRAFEGTTLAMTNGA--WVMGAAGAGFLLMKD-MSSFLQSWKHLEDGARTETAEELRALAKKLEQELDRLTQHHRHLPQKASQ................................. 356
7 -9.010sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens GN=PCF11 PE=1 SV=3 (Range: 1051-1350)  ali follow..  117FNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFGNFGNIPAPMTVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQNPSGALPKAYPDNHLSQVDVNELFSKLLKILKLSQTDSATTQVSEVTAQPPPEEEEDQNEDQDVPDLTNTVEKQRYDSVINRLYT----------GIQCYSCGM...................................................................................................................................................................................................................... 298
8 -9.000sp|P0C7T8|CN176_HUMAN Transmembrane protein C14orf176 OS=Homo sapiens GN=C14orf176 PE=2 SV=1  ali follow..  3.................................................................................................................................DRAGEQEQERHSLRLEKLQHWARHRQSGH------LVLA----VSQLWLAVVVVPLAVSVAPGASGLLTGTVTLELR----------------RAPRLWKVRAMMIFNTFNLILGFIVVVVEVM.................................................................................................................................................... 116
9 -8.900sp|Q9BYW2|SETD2_HUMAN Histone-lysine N-methyltransferase SETD2 OS=Homo sapiens GN=SETD2 PE=1 SV=3 (Range: 1951-2250)  ali follow..  10  1...................................................TSEPEADAEIEPKESNGTKLEEPINEETPSQDEEEGVSDVESERSQEQPDKTVDISDLATKLLDS------KDLKEVYRIPKKSQTEKENTTTERGRDAVGFRDQTPA.................................................................................................................................................................................................................................................. 103
10 -8.800sp|Q96LR9|APLD1_HUMAN Apolipoprotein L domain-containing protein 1 OS=Homo sapiens GN=APOLD1 PE=2 SV=2  ali follow..  10  42.......................................................................................................................PHGPDALRRFQGLLLDRRGRLHGQVLRLREVARRLERLRRRSLVANVTGALAAIVGLSLSPVTLGTSLLVSAVGLGVTAGGAVTITSDLSLIFCNSRELRRVQEIAATCQDQMREILSCLEFFCRWQGCGDRQLLQCGRNASIALYNSVYFIVFFGSRGFLIPRRAEG-----DTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSRGHDLKISADQRA................................................... 275

FFAS is supported by the NIH grant R01-GM087218-01
9 8 9 2 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.