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anford Burnham Prebys Medical Discovery Institute
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Query: gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKNKGIVFPPFSINIANIFVPDLSGANRFLACSLLEFLTYLSSVLLLMLWKILNIYIYGLMQHSRNQNIIAKRYIVYTVLFILKTANIRANPVTLSPLast
1 -13.300sp|Q9H5I5|PIEZ2_HUMAN(removed signalp:1-24) Protein PIEZO2 OS=Homo sapiens GN=FAM38B PE=2 SV=2 (Range: 1651-1950)  ali follow..  20  246..........................ARSEMVCYFVIILNHMVSASMITLLLPILIFLWAMLSVPRPSRRFWMMAIVYTEV................. 300
2 -12.700sp|Q9H5I5|PIEZ2_HUMAN(removed signalp:1-24) Protein PIEZO2 OS=Homo sapiens GN=FAM38B PE=2 SV=2 (Range: 1801-2100)  ali follow..  20  96..........................ARSEMVCYFVIILNHMVSASMITLLLPILIFLWAMLSVPRPSRRFWMMAIVYTEVAIV.............. 153
3 -11.900sp|Q92508|PIEZ1_HUMAN Protein PIEZO1 OS=Homo sapiens GN=FAM38A PE=1 SV=4 (Range: 1651-1950)  ali follow..  15  35..........................AHSELLCYFIIILNHMVTASAGSLVLPVLVFLWAMLSIPRPSKRFWMTAIVFTEIAVV.............. 92
4 -9.190sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2 (Range: 451-656)  ali follow..  12  27......LIVPPAEPGACAVRVTELCSSTM--TCMKDTYLVHLTCSS--DLESVVKKLFTPYTETEINEEELTKPRLLWALYFNMRDSSGISRSSY... 117
5 -9.020sp|Q00975|CAC1B_HUMAN Voltage-dependent N-type calcium channel subunit alpha-1B OS=Homo sapiens GN=CACNA1B PE=1 SV=1 (Range: 901-1200)  ali follow..  228................SSMFCLSPTNLLRRFCHYIVTMRYFEVVILVVIALSSIALAAEDPVRTDSPRNNALKYLYIFTGVFTFEMV........... 299
6 -8.980sp|Q92508|PIEZ1_HUMAN Protein PIEZO1 OS=Homo sapiens GN=FAM38A PE=1 SV=4 (Range: 1501-1800)  ali follow..  15  185..........................AHSELLCYFIIILNHMVTASAGSLVLPVLVFLWAMLSIPRPSKRFWMTAIVFTEIAVV.............. 242
7 -8.630sp|Q15878|CAC1E_HUMAN Voltage-dependent R-type calcium channel subunit alpha-1E OS=Homo sapiens GN=CACNA1E PE=1 SV=3 (Range: 901-1200)  ali follow..  10  224.........GKAMVPHSSMFIFSTTNPIRRACHYIVNLRYFEMCILLVIAASSIALAAEDPVLTNSERNKVLRYFYVFTGVFTFE............. 300
8 -8.110sp|Q9P1Z9|CI174_HUMAN Uncharacterized protein C9orf174 OS=Homo sapiens GN=C9orf174 PE=1 SV=2 (Range: 1-300)  ali follow..  18  25......................LGIGMKAFHNFNYFLFFYNVLLGLGACLSRLLISCLLGMWLIARIDRTIMQSFSAW--IGMLYMDHYHINPVLVS. 105
9 -8.070sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3 (Range: 451-653)  ali follow..  11  25......LTVPAEEPGTFAVRVIELCSSTM--TCMKGTYLVHLTCT---DLESVVQKLFVPYTEMEIENEQVEKPRILWALYFNMRDSSDISRSCY... 115
10 -7.960sp|Q16821|PPR3A_HUMAN Protein phosphatase 1 regulatory subunit 3A OS=Homo sapiens GN=PPP1R3A PE=1 SV=3 (Range: 901-1122)  ali follow..  25  169.......................SKYTNSKIPYFLL-FLIFLITVYHYDLMIGLTFYVLSLSEEGRQKESVKKK........................ 222

FFAS is supported by the NIH grant R01-GM087218-01
9 8 9 2 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.