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Query: gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKISSFISTSLPLPTSVSGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLMLast
1 -6.640[S] COG4718 Phage-related protein  ali follow..  13.............................................................................................................................NVVSEPKVVTVKLGDGYEQRRAAGLNNVTIRVRKCEHPSLKAFLERHGGVRAF-QWTPPYDWKPIRVVCRKWSASVGALWVTITADFEQVVA.. 109
2 -5.910[S] KOG4514 Uncharacterized conserved protein  ali follow..  10  206....................................................................................................................VLSDIEL-EAQYLASSVDNL------MENLGNLLHSISSITADNVEVHRNAVNKL-------DTLDANIKCQYQLLAKAEEITKSMKPTEQLGQRIRQIKRLV 295
3 -5.750[J] KOG2783 Phenylalanyl-tRNA synthetase  ali follow..  13  186..........................KSMVDDETTALETHNDMQDIYSLEETKFVSQHLKDTLTTVIHDLVSLAPSISSGAEQVRYRWTYDSFPFTKPSFQLEIDWKGKWLEILGCGVVQDRLLKGAGL-NNYIGWAFGIGLERLAMIGIPDIRLFWSLDERFSKQFLPNKISTFKPFSKYPACFKDIAFWINNDFNPNDFYEIIRDVCQDMVESVNLI 379
4 -5.360[R] KOG4373 Predicted 3`-5` exonuclease  ali follow..  18  78............................................................................................................................DARKLERSRHQLEIDD--LRKYVEDSSGRRSMRGCSFEVIVEECLGYRG-EISMSDWSA--------ELCDDQILQAS................. 153
5 -5.150[S] COG4842 Uncharacterized protein conserved in bacteria  ali follow..  13  2..............................................................................................................................DMIRYEFGAIQGAATDINSTSGRINSLLD----GLKSQLQPMV---------ASW---GESSEAYSEAQLKWDRAAAELNTILATISNTVA.. 77
6 -5.150[R] COG1546 Uncharacterized protein (competence- and mitomycin-induced)  ali follow..  13  23.......................................................................................................................SLASIVVEELKRQGKTIAAAEGLFQATVANFSGVSSIFKGGFVTYSLEEKSRMLD---LEEHGVVSEFTAQKMAEQ........................ 104
7 -5.050[L] COG3057 Negative regulator of replication initiationR  ali follow..  13  1..............................MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAA-------DEQTLLKNGNQTKPKHVPGTPY------------WVITNTNTGRKCSMIEHIMQSM....... 167
8 -4.780[Q] COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component  ali follow..  10  47LTMLADRAGLVMDRGSKITYNGIGRVADISETV-RNGRPVAEFTLDVYPRYLSLIPANVNADIKATTVFGGKYVSLTTPEHPSQKRLTPQTVIDARSVTTEINTLFQTI--------TLIAEKVDPIKLNLTLSAAAQGLGEFGQSIVNGNSVLDDVNSQLPQARHDIQQLA---------DTYANSASDFFDFLNNSIVTSRTINQQQKDLDQVLL.. 254
9 -4.730[U] COG0811 Biopolymer transport proteins  ali follow..  16  103...........................................................................................................EAIIKGTMRAMNLAMNREIESLENRVPFLATASGTVWGIMHAFMALSGAKQATLQMVAPGIAEALIA--------TAIGLFAAIPA-SLRVNAIEQDYGNFIDEFTTILH.. 219
10 -4.720[J] KOG3420 Predicted RNA methylase  ali follow..  16  1............................................................................................................MPDKKTLWMLNELEGFEKPKIKKKLIDIGCGCGMLMTTAATMYELETVLGVDIDDEALKIFDVAVINPPFGT--NNAGIDMQFVQIGLQMVRPGGSVFSLSSTRDYILKNA 170

FFAS is supported by the NIH grant R01-GM087218-01
9 8 9 2 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.