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Query: VFG1643 (gi:11322961) sfaD - SfaD protein [Escherichia coli 536], from VFDB

Results of FFAS03 search in SCOP175
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKISKMAVMLFLLPPAALAGNHWHVMLPGGNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVVSQRVGISFYGVSDIHEPELLSVEEENDASDGIAIALFNESGELVKLNQPPENWVHLTRGDMKLHMQARYKATHYPVAGGKANGQVWFSLTYLLast
1 -56.600d2j2zb1 b.2.3.2 (B:24-173) PAP fimbrial minor pilin protein PapH {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  1..............................RAAFHGEVVRPACTLAMEDAWQIIDMGETPVRDLQN-GFSGPERKFSLRLRNCEFNSQSRIRVTFDGVRGETPDKFNL----SGQAKGINLQIADVRGNIARAGKVMPAIP-LTGNEEALDYTLRIVRNGKKLEAGNYFAVLGFRVDY. 149
2 -56.500d1pdkb_ b.2.3.2 (B:) PapK pilus subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  1.....................................LLDRPCHVSGDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLENCHTAVGKIVTLTFKGTEEAALPGHLKVTG--VNAGRLGIALLDTDGSSLLKPGTSHNGEKVTGNSLELPFGAYVVATPESVVPGDYEATATFELTY. 148
3 -55.600d2uy6b1 b.2.3.2 (B:10-163) Pap fimbrial major pilin protein PapA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  24  1..............................KVTFNNTVVDAPCSISQKSADQSIDFGQLSKSFLEA-GGVSKPMDLDIELVNCDITAFKTVKLAFTGPIVNGHSDELDT----NGGTGLAIVVQGAGKNVVFDGSEGDANT-LKDGENVLHYTAVVKAVGAAVTEGAFSAVANFNLTY. 153
4 -37.400d1ze3h1 b.2.3.2 (H:159-279) Mannose-specific adhesin FimH {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  1........................................GGCDVS--ARDVTVTLPDY-----------PGSVPIPLTV-YCAKSQ--NLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTR-NGTIIPANNTVS-LGAVGTSAVSLGLTANYARTGGQVTAGNVQSIIGVTFVY. 120
5 -36.000d1n12a_ b.2.3.2 (A:) PapE pilus subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  3.........................................ACTVS----NTTVDWQDVEIQTLSQNGNHEKEFTVNM---RCPYNL-GTMKVTITATNTYNNAILVQNTSNTS-SDGLLVYLYNSNAGNIGTAITLGTPFTPGDKTISLHAKLGYKGNMQNLIAGPFSATATLVASY. 137
6 -8.680d1q25a3 b.64.1.1 (A:281-432) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  10  2..................................RDYLESRSCSLSSAQHDVAVDLQPLSREASDSLFYTSEADEYTYYLSICGGNKKDAAVCQVKKADSTQVKVAGRPQNLTLRYSDGDLTLIYFGGEECSSGFQRMSVINFECNQTA.............................. 123
7 -7.410d2rl8a1 b.64.1.1 (A:4-154) Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  10  4....................................DLVGEKGKESEKELALLKRLTPLFQKSFEST-VGQSPDMYSYVFRVCREAGQHGAGLVQIQKSNGKETVVGRFNETQIFQGSNWIMLIYKGGDEYDNHCGREQR------RAVVMISCNRHTLADNFNPVSEERGKVQDCFYL 141
8 -7.330d1q25a2 b.64.1.1 (A:130-280) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  10  4.......................................EVPCYAFDRE-LKKHDLNPLIKTS-YLVDDSDPDTSLFINV--CRDIEVLRASSPQVRVCPTGAAACLVRGDRAFDVGRPQEGLKLVSNDRLVLSYVKEGAGQPDFCDGTITFVCPSERREGTIPKLTAKSNCRFEIEW. 145
9 -7.250d1gp0a_ b.64.1.1 (A:) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  2..........................................CQVTNPSTGHLFDLSSLSGRAGFTAAYSEK---GLVYMSICGENENCPPGV---GACFGQTRISVGKANKRLRYVDQVLQLVYKDGSPCPSKSGLSYKSVI-----SFVCRPEAGPTNRPMLISLDKQTCTLFFSW. 126
10 -7.030d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  12  5.........................................................................VNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSH............................... 79

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Robinson-Rechavi M, Alibes A, Godzik A. Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: lessons from structural genomics of Thermotoga maritima. J Mol Biol. 2006 Feb 17;356(2):547-57. Epub 2005 Dec 7.