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vfdb.0000004
Query: VFG1643 (gi:11322961) sfaD - SfaD protein [Escherichia coli 536], from VFDB

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKISKMAVMLFLLPPAALAGNHWHVMLPGGNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVVSQRVGISFYGVSDIHEPELLSVEEENDASDGIAIALFNESGELVKLNQPPENWVHLTRGDMKLHMQARYKATHYPVAGGKANGQVWFSLTYLLast
1 -58.400d2j2zb1 b.2.3.2 (B:24-173) PAP fimbrial minor pilin protein PapH {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  1..............................RAAFHGEVVRPACTLAMEDAWQIIDMGETPVRDLQN-GFSGPERKFSLRLRNCEFNSQGGIRVTFDGVRGETPDKF----NLSGQAKGINLQIADVRGNIARAGKVMPA-IPLTGNEEALDYTLRIVRNGKKLEAGNYFAVLGFRVDY. 149
2 -56.400d2uy6b1 b.2.3.2 (B:10-163) Pap fimbrial major pilin protein PapA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  23  1..............................KVTFNNTVVDAPCSISQKSADQSIDFGQLSKSFLEA-GGVSKPMDLDIELVNCDITAFKTVKLAFTGPIVNGHSDELD----TNGGTGLAIVVQGAGKNVVFDGSEGDAN-TLKDGENVLHYTAVVKKVGAAVTEGAFSAVANFNLTY. 153
3 -55.400d1pdkb_ b.2.3.2 (B:) PapK pilus subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  21  1.....................................LLDRPCHVSGDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLENCHATAGKIVTLTFKGTEEAALPGHLKVT--GVNAGRLGIALLDTDGSSLLKPGTSHNKGKVTGNSLELPFGAYVVATPESVVPGDYEATATFELTY. 148
4 -39.300d1ze3h1 b.2.3.2 (H:159-279) Mannose-specific adhesin FimH {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  1........................................GGCDVS--ARDVTVTLPDY-----------PGSVPIPLTV-YCAKSQ--NLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTR-NGTIIPANNTVS-LGAVGTSAVSLGLTANYARTGGQVTAGNVQSIIGVTFVY. 120
5 -31.800d1n12a_ b.2.3.2 (A:) PapE pilus subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  3.........................................ACTVSNTT----VDWQDVEIQTLS--QNGNHEKEFTVNM-RCP-YNLGTMKVTITATNTYNNAILVQN-TSNTSSDGLLVYLYNSNAGNIGTAITLGTPFTPNADKTISLHAKLGYKNMQNLIAGPFSATATLVASY. 137
6 -9.250d1q25a3 b.64.1.1 (A:281-432) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  10  2..................................RDYLESRSCSLSSAQHDVAVDLQPLSREASDSLFYTSEADEYTYYLSICGGSQKDAAVCQVKKADSTQVKVAGRPQNLTLRYSDGDLTLIYFGGEECSSGFQR---------MSVINFECNQTAGNNGRGAPVFTGEVDCTYFF. 143
7 -8.070d2rl8a1 b.64.1.1 (A:4-154) Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  4....................................DLVGEKGKESEKELALLKRLTPLFQKS-FESTVGQSPDMYSYVFRVCREAGQHSSGAG-------------------------LVQIQKSNGKETVVGRFNETQIFQGSNWIMLIY-----KGGDEYDNHCGREQRRAVVMIS 115
8 -7.840d1q25a2 b.64.1.1 (A:130-280) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  4.......................................EVPCYAFDRE-LKKHDLNPLIKTS-YLVDDSDPDTSLFINV--CRDIEVLRASSPQVRVCPTGAAACLVRGDRAFDVGRPQEGLKLVSNDRLVLGAGQPDFCDGHSPAVTITFVCPSERREGTIPKLTAKSNCRFEIEW. 145
9 -7.640d1gp0a_ b.64.1.1 (A:) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  2..........................................CQVTNPSTGHLFDLSSLSGRAGFTAAYSEKGL-VYMSI--CGENENCPPGV---GACFGQTRISVGKANKRLRYVDQVLQLVYKDGSPCPSKSGLSYKSVI-----SFVCRPEAGPTNRPMLISLDKQTCTLFFSW. 126
10 -6.790d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  43........................................EVCDVQRAPGQAH-----LRTGWVPRRGAVHVYATLRFTMLECLSRAGRSCKETFT-ESDADTATALTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVNVKTLRLGPLSKAGFYLAFQDQ---GACMALLSLHLFY. 178

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.