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Query: VFG000865(gi:387604907) (aap/aspU) Dispersin [Dispersin (VF0215)] [Escherichia coli O44:H18 042], from VFDB

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKIKFVIFSGILGISLNAFAGGSGWNADNVDPSQCIKQSGVQYTYNSGVSVCMQGLNEGKVRGVSVSGVFYYNDGTTSNFKGVVTPSTPVNTNQDINKTNKVGVQKYRALTEWVKLast
1 -7.600d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  6...............PMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSSCHLCKEAMRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYV.. 111
2 -7.320d2jnaa1 d.230.6.1 (A:1-96) Hypothetical protein STM0082 {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  16  1MKKRIIAAALLATVASFSTLA------AEQVSKQEIINVSQSGGQISSPSDLREKLSELADAKGGK.................................................. 70
3 -6.760d1t61a1 d.169.1.6 (A:6-114) Noncollagenous (NC1) domain of collagen IV {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  13  29................LYVQGNERAHGQDLGTAGSCLRFSTMPFLFCNINNVCNFASRNDYS...................................................... 75
4 -6.520d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  16  40LPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAF-------YAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNHGPSGNYLSSYAPGMGLDYAEPHMRR--------GNARMWLR 155
5 -6.270d3mc4a_ b.81.1.0 (A:) automated matches {Brucella melitensis [TaxId: 359391]}  ali model 3D-neighbors follow..  15  155..........LFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIG--AGAKILGNIQVGQCSKIAAGSVVVPHNVTVAGVPARIIGETG............ 249
6 -6.070d1pwba1 d.169.1.1 (A:235-355) Surfactant protein, lectin domain {Human (Homo sapiens), SP-D [TaxId: 9606]}  ali model 3D-neighbors follow..  13  8.................................EKIFKTAGFVKPFTEAQLLCTQA-NEAAFLSMTTEGKFTYPTGESLVYS-------NWAPGEPNDDGGSEDCVEIFTNGKW.. 106
7 -5.940d1g4ia_ a.133.1.2 (A:) Phospholipase A2 {Cow (Bos taurus), pancreas [TaxId: 9913]}  ali model 3D-neighbors follow..  15  24...............NYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSCKVLVDNPYTNNYSYS................................................ 76
8 -5.920d1bd0a1 b.49.2.2 (A:2-11,A:245-382) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  11  23.............................KLQPGEKVSY---GATYTAQTEEWIGTIPIGYADGWRLQHFHVLVDGQKAPIVGRICMDQCMIRLPGPLPVGTKVTLIGR....... 101
9 -5.890d2h2tb_ d.169.1.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  13.................................RKCYYFGKGTKQWVHARYACDDASHTGSWIGLRLKGEFIWVDGSHVDYS-------NWAPGEPTSRSQSEDCVMMRGSGRW.. 109
10 -5.880d3a99a_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  150LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYH--RYHGRSAAVWS-----------GILLYDMVCGDIPFEHDEEIFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHWMQ 259

FFAS is supported by the NIH grant R01-GM087218-01
8 2 9 5 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.