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vfdb.0000004
Query: VFG1643 (gi:11322961) sfaD - SfaD protein [Escherichia coli 536], from VFDB

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKISKMAVMLFLLPPAALAGNHWHVMLPGGNMRFQGKIIAEACSLALSDRQMTVDMGQLSSNRFHAAGEYGDPVGFDIHLQDCSTVVSQRVGISFYGVSDIHEPELLSVEEENDASDGIAIALFNESGELVKLNQPPENWVHLTRGDMKLHMQARYKATHYPVAGGKANGQVWFSLTYLLast
1 -39.100PF00419.15; C0ARF8_9ENTR/245-441; Fimbrial protein  ali follow..  13  2.............................NMSRRIYIRNASTCFVR--NVTPYVLFPLVTINELASGKKVTL--PITIDF-YCQSNVNKAIELGLTVPNGAAITHLVTDGTDSSMAKGVGVRIYRPSGVPLNLLSTLANEFNNGITDLTKTLYASLEALPEKITAGKFNATLQVIIQV. 196
2 -12.200PF05229.10; Q6D2M1_ERWCT/27-175; Spore Coat Protein U domain  ali follow..  13  2............................SSTFDVEATIQKG-CVFGTSTASSQPNMGTLSFGIRGATATNVDVASTSIIAT-CTPGINAIIELDYGTNGGSSTQRYLKN---AAGTRLLAYQLYRDAARTLVWGTGGLALSIVSFPPQTYTVYARYFGGTPLPPAGIYTDNVTVS.... 149
3 -11.900PF06551.7; GLTF_ECOLI/33-146; Protein of unknown function (DUF1120 topsan)  ali follow..  1...............................LTIIGEYTPGACTPVVTGGG-IVDYGKHHNSALNPTGKSNKLVQLGRKNSTLNITCTAPTLIAVTSKDNRQSTIVALNVDMKGTKNAFGLGSAPNGQK.................................................. 109
4 -9.520PF03628.8; Q9L6E3_ECOLX/227-335; PapG chaperone-binding domain  ali follow..  13  2........................................................GDLSINSANN---HYAAQTLSVS---CDVPTNIRFFLLSNTNPAYSHGQQFSVGLGHGWDSIVSIN-----------DTGETTMRWYRAGTQNLTIGSRLYGESSKIQPGVLSGSATLLMIL. 108
5 -8.380PF10836.3; Q0TFY0_ECOL5/1-93; Protein of unknown function (DUF2574 topsan)  ali follow..  17  1MNKYWLSGIIFLAYGLASPAFSSET----ATLTINGRISPPTCSMAMVNGQPQQHCGQLTYNVDTRHQVSSPVKGVTTEVIAADSDSKRRIVLN..................................................................................... 90
6 -7.740PF02408.15; O17946_CAEEL/210-328; CUB-like domain  ali follow..  3.......................................FEVC-----KRENDAPVLMNEPYFYPSSWNQTLNPPMYAPNQMCYIPMGYYATFAMKADIGGDN-----------------LTISDSNGNTELIMTSDLQPYVFVGNKFTINLIV---------GANGNSTKFGFVVQW. 115
7 -7.230PF05538.6; Q9F788_CAMJE/1-431; Campylobacter major outer membrane protein  ali follow..  11  1MKLVKISLVAALAAGAFSAANATPLEEAIKDIDVSGVL-----RYRYESSNPWSNANFGSGISGKQDHKYRAQVNFSGAISD---NFKAFVQFDYNSQDGGYGTDSISNTSDTLTVRQLYLTYNEDVATSVIAGKQQLNTIWTDNGIDGLVGTGVKVVNNSTLAAFAMDS......... 167
8 -7.100PF12276.3; A3WY16_9BRAD/1-145; Protein of unknown function (DUF3617 topsan)  ali follow..  17  1MRQSLRLSIFLPLLLLCAAPALAEVQLPLGLWDIKVKHMVQQCTSEAVDREFTSDFAPSAKQNCSKADIQKNATGYVMDSV-CTMTVTAHGETSGDFNSAYTVNVTSHSEGGKLGKQDNKITIAAK..................................................... 139
9 -7.100PF11579.3; A9VFQ0_BACWK/1-194; Protein of unknown function (DUF3238 topsan)  ali follow..  34........................................................GDSREFTPHAVNTMRSRVEQEVVVDFYKEEVFSYANTGITTEKVTNPDGSVNKRTGKASTENIVCTDISWNSDGVQFKMSASASNPLNVYAPPVDYTVCVNKDGSIDIQGEHDGFPCFEF-YK 157
10 -6.150PF13186.1; B8FTT8_DESHD/247-313; Domain of unknown function (DUF4008 topsan)  ali follow..  12  10...............................VWPNGDVQ--PCDAIYKP----CVLGNVHNTNLREMWDSELLKQFRIRHLRCSN.............................................................................................. 65

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Rychlewski L, Jaroszewski L, Li W, Godzik A. Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci. 2000 Feb;9(2):232-41.