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vfdb.0000002
Query: VFG2286 (gi:110801889) cpe - enterotoxin Cpe [Clostridium perfringens SM101] (VF0383), from VFDB

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLSNNLNPMVFENAKEVFLISEDLKTPINITNSNSNLSDGLYVIDKGDGWILGEPSVVSSQILNPNETGTFSQSLTKSKEVSINVNFSVGFTSEFIQASVEYGFGITIGEQNTIERSVSTTAGPNEYVYYKVYATYRKYQAIRISHGNISDDGSIYKLTGIWLSKTSADSLGNIDQGSLIETGERCVLTVPSTDIEKEILDLAAATERLNLTDALNSNPAGNLYDWRSSNSYPWTQKLNLHLTITATGQKYRILASKIVDFNIYSNNFNNLVKLEQSLGDGVKDHYVDISLDAGQYVLVMKANSSYSGNYPYSILFQKFLast
1 -70.700PF03505.9; Q45877_CLOBO/230-426; Clostridium enterotoxin  ali follow..  19  1......................................................DKDLIGTLLIEAGSSGSIIQPRLRNTTRPLFTTDTKFSQQYTEERLKDAFNVQLFNTSTSLFKFVEEAPSDKNICIKAYNTYEKYELIDYQNGSIVNKAEYYLPSLGYCEVTNAPSPEQVAEDGFIQNGEEIVVGVPSENI-QEINTAISDNYTYNIPGIVNNNPFYILFTVNTTGIYKINTQNNL............................................................................... 197
2 -6.070PF03330.13; Q8KA94_CHLTE/70-164; Rare lipoprotein A (RlpA)-like double-psi beta-barrel  ali follow..  14  6....................................................................................................................................................................................................................................ASWYGKETLDQHNGQPTAYGEIFDPDLPSAAHKYLPLPMIVRVTNLENN-GPFVDGRVIDLSAAAAKALGFYGKGTA.............. 91
3 -5.590PF12377.3; B3L2E8_PLAKH/95-161; Duffy binding protein N terminal  ali follow..  26  9................................................................................................................................................................................................................................................................KTDNKTNKGEGARNMVMLDYDISDGIIDNVVELGTEDEGNFL---ENSSKGGDHPY....... 66
4 -5.030PF01186.12; LOXL1_HUMAN/370-574; Lysyl oxidase  ali follow..  27  102...................................................................................................................................................................................................................................................KVAEGHKASFC---LEDSTCDFGNLKRYASHTQGLSPGCYDTYIDITVQPGNYILKVHVNSDFTNN.......... 182
5 -4.990PF08820.5; Q3XXI5_ENTFC/7-128; Domain of unknown function (DUF1803 topsan)  ali follow..  28  32..............................................................................................................................................................................................................................................................................LRELKKEFSQNKFSHFLDLLIDAG---LIKREERRYHLNFPI....... 70
6 -4.820PF00394.17; Q9UVU8_PYCCI/165-307; Multicopper oxidase  ali follow..  24  30.................................................................................................................................................................................................................................INGLGRAATDSTSDLTVIAVEHGKRYRFLVSISCDPNHTFSIDGHNMTIIEVEGVNSKPLTVDIQIFAAQYSFVLNANQP-VDNY......... 116
7 -4.700PF02760.10; IF16_HUMAN/201-370; HIN-200/IF120x domain  ali follow..  13  9...................................................................................VLSTTKPFEYETPEMEKKIMFHATV-------------ATQTQFFHVKVLNTSLKEKFNGKKIIIISD----YLEYDSLLEVNEESTVSEAGPNQTFEVPNKIINRAKETLKIDILHKQASGNIVYGVFMLHKKTV-TTIYEIQDRGKMDVVGTGQCHNIPCEEGDKLQLFCFRL............................................................. 169
8 -4.580PF05091.7; EIF3D_CAEEL/4-549; Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)  ali follow..  12  251.....IQELAQGGAGNVFGTDIILATLMTAPRSVYSWDGDKLFFDKRNTRDILNPVETLT--VSETSAEPPSFDGNGINNAKDLATEAFYINQNFRRQVVK---------RNDAGFTFKNARAPFEDEETGESGTAYKYRKWNLGNGVDGKPVELVCRT-------------ELDGVIHGLGNETQTLTIKAFNEWDS-----TQSGGVDWRTKLDVQKGAVMATEIKNNSAKVAKWTLQALLAGSDTMKLGYVSRNLLTQYVKPTEFASNIALNMDNCWGILRCVIDSCMKPGKYLLMKDPQSPVIRLY......... 544
9 -4.540PF06214.6; SLAF1_HUMAN/1-126; Signaling lymphocytic activation molecule (SLAM) protein  ali follow..  17  30................................................................................................................................................................................................................MNCPKILRQLGSKVLLPLTYERINK-SMNKSIHIVVTMAKSLENSVENKIVSLDPSEAG-------PRYLGDRYKFYLENLTLDEGWYLMTLEKN................ 125
10 -4.520PF08535.5; Q0B127_BURCM/158-249; KorB domain  ali follow..  16  1.....................................................................................................................................................................................................................................................AKGKKKGEIAKEIGKSPAFVTQHVTLLDLPEPIAEAFNSGRGK............................... 43

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.