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Query: VFG000865(gi:387604907) (aap/aspU) Dispersin [Dispersin (VF0215)] [Escherichia coli O44:H18 042], from VFDB

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MKKIKFVIFSGILGISLNAFAGGSGWNADNVDPSQCIKQSGVQYTYNSGVSVCMQGLNEGKVRGVSVSGVFYYNDGTTSNFKGVVTPSTPVNTNQDINKTNKVGVQKYRALTEWVKLast
1 -46.1002jvu_A mol:protein length:104 DISPERSIN  ali model follow..  100  1.....................GGSGWNADNVDPSQCIKQSGVQYTYNSGVSVCMQGLNEGKVRGVSVSGVFYYNDGTTSNFKGVVTPSTPVNTNQDINKTNKVGVQKYRALTEWV. 94
2 -7.5002b5x_A mol:protein length:148 YkuV protein  ali model follow..  11  6...............PMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSSCHLCKEAMRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYV.. 111
3 -7.4302jna_A mol:protein length:104 Putative secreted protein  ali model follow..  16  1MKKRIIAAALLATVASFSTLA------AEQVSKQEIINVSQSGGQISSPSDLREKLSELADAKGGK.................................................. 70
4 -7.1203eo5_A mol:protein length:171 Resuscitation-promoting factor rpfB  ali model follow..  11  85.....................................VPPVIDGSIWDAIAGCEAGGNWAINTGNGYYGGVQFDQGTWEANGGLRYAPRADLATREEQIAVAEVTRLRQGWGAW.. 161
5 -6.6102x3a_A mol:protein length:343 TOXIC EXTRACELLULAR ENDOPEPTIDASE  ali model follow..  1...MMKVTPIALLLAGVLASPLCAAGLDAQLTLVGSTDDVRVNLTLTNTGDKPIRLLKWQLPGSDDAPLFLVERDGQPVSYEGALKAGQSLTVQAEVS.................. 110
6 -6.5403bx4_B mol:protein length:146 Aggretin beta chain  ali model follow..  11  1...MGRFIFVSFGLLVVFLSLSGTGADCPS--EGHCYKPFNEPKNWADAERFCKLQPKHSHLVSFQVVKLTRPRLKANLVWMGLSNIWHG-RLNYKDWQEQSECLAFRGVHTEW.. 129
7 -6.5401eh9_A mol:protein length:558 GLYCOSYLTREHALOSE TREHALOHYDROLASE  ali model follow..  18  122IRKLDYLKDLGITAIEIAQFPGKRDWGYDGVYL-------YAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHGPEGNYMVKLGPGLTFNFDDAESDEVRKFI---ENVEYWIK 242
8 -6.5401sb2_B mol:protein length:129 Rhodocetin beta subunit  ali model follow..  10  13.................................LYCYKPFKEKKTWIEAERFCAKQAENGHLVSIGSAAEADF---------------DLVIVVNFDKQRYRAWTGLTERNLKWT. 80
9 -6.4802bhu_A mol:protein length:602 MALTOOLIGOSYLTREHALOSE TREHALOHYDROLASE  ali model follow..  16  150LPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAF-------YAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNHGPSGNYLSSYAPGMGLDYAEPHMRR--------GNARMWLR 265
10 -6.3603m07_A mol:protein length:618 Putative alpha amylase  ali model follow..  14  154LPYLAELGVTVIEVMPVAQFGGERGWGYDGVLL-------YAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNHGPEGNYLPLLAPGNGIAYDVDAVRR--------EAPLYWLT 269

FFAS is supported by the NIH grant R01-GM087218-01
8 2 7 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.