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281901
Query: TM0020 TM0020 281901 Purified-2001-08-24, from T.maritima

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIELDYLTIAFGGAIGAVLRYLVSRTINSLLPFSYIPLGTIIVNSVGSFFLSFLMFAAIEKVPLSKEAILFFGTGLLGAFTTFSTFTYETLSLIEESPARGVAYALANLLFAFTCAYFGMILGRGKVLast
1 -6.080d1r45a_ d.166.1.1 (A:) Exoenzyme c3 {Clostridium botulinum C bacteriophage [TaxId: 12336]}  ali model 3D-neighbors follow..  81......IILFRGDDPAYLGPEFQDKILNKDGTINKTVFEQVKAKFLKKDRTGYISTSLMSAQFGGRPIVTKFKVGSKGGYIPISYFPGQLEVLLPRNNSYYISDMQIS................... 187
2 -5.590d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}  ali model 3D-neighbors follow..  11  4........................................YVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIVNCGIVLN... 87
3 -5.560d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}  ali model 3D-neighbors follow..  13  4........................................FVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIITVVVIN... 87
4 -5.360d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  12  31......................................GVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIAL.................. 101
5 -5.190d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  13  27......VAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGH-AGRLVFGILNGRAC--------------VMMQGRFHMYEGYPFWKVTFVRVFRLLGVETLVVTNAAG............... 118
6 -5.030d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  16  139VVGEGIAMAHLKGAIYELAQALFGPDSKVRFQPVYFPFGGKWLELGGA---GMVHPKVFQAVDAYRE-----RLGLPPAYRGVTGFAFERLAMLRYG.............................. 244
7 -4.930d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  11  1...........GSSGSSGMLITVYCVRRDLTEV------TFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMELTDDHCSLGSYGLKDGDMV................................. 79
8 -4.900d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  216..........LGWGVGG---------IEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATI............................ 295
9 -4.860d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  36.............AIG--INFIDTYIRSGLYPPPSLPSG------LGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAA--XIKVDVAEQQKYPLKDAQRAHEI..... 134
10 -4.850d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]}  ali model 3D-neighbors follow..  10  8..............................LSNALFPAGVLRLRVFDGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPALLELACTG.............................. 87

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.