current user: public




Query: TM0020 TM0020 281901 Purified-2001-08-24, from T.maritima

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MIELDYLTIAFGGAIGAVLRYLVSRTINSLLPFSYIPLGTIIVNSVGSFFLSFLMFAAIEKVPLSKEAILFFGTGLLGAFTTFSTFTYETLSLIEESPARGVAYALANLLFAFTCAYFGMILGRGKVLast
1 -6.110d1h67a1 a.40.1.1 (A:28-134) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  12  30......................................GVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIAL.................. 100
2 -5.460d3fuca_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  13  25......VAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGH-AGRLVFGILNGRAC--------------VMMQGRFHMYEGYPFWKVTFVRVFRLLGVETLVVTNAAG............... 116
3 -5.400d1sx5a_ c.52.1.2 (A:) Restriction endonuclease EcoRV {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  103...........KFTLGGYTSF-----IRNNTKNIVYPFDQYIAH----WIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEG........ 201
4 -5.240d1bcoa2 c.55.3.3 (A:258-480) mu transposase, core domain {Bacteriophage Mu [TaxId: 10677]}  ali model 3D-neighbors follow..  11  14....................YLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVGIPEDFHITIDNTRGAANKWLTGGAPNRYRFKVKEDDPKGLFLL-MGAKMHWTSV 122
5 -5.100d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}  ali model 3D-neighbors follow..  11  4........................................YVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIVNCGIVLN... 87
6 -5.040d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  216..........LGWGVGG---------IEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMC........................ 299
7 -4.990d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}  ali model 3D-neighbors follow..  13  4........................................FVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIITVVVIN... 87
8 -4.970d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  36.............AIG--INFIDTYIRSGLYPPPSLPSG------LGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAA--XIKVDVAEQQKYPLKDAQRAHEI..... 134
9 -4.930d2j3xa1 d.166.1.0 (A:2-217) automated matches {Clostridium botulinum [TaxId: 1491]}  ali model 3D-neighbors follow..  128.....................................LDKVRQQIINQEYTSFISLGLNDNSINESVVKTRVPTTFDYGVLNDKE---TVSLLLNQGFSIIPESAIITTIKGKDYILIEGSLSQ... 216
10 -4.850d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]}  ali model 3D-neighbors follow..  10  8..............................LSNALFPAGVLRLRVFDGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPALLELACTG.............................. 87

FFAS is supported by the NIH grant R01-GM087218-01
8 2 9 7 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.