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Query: TM0015 TM0015 281896 PDB-2007-09-14, from T.maritima

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPVAKKYFEIRWHGRAGQGAKSASQMLAEAALEAGKYVQAFPEYGAERTGAPMRAFNRIGDEYIRVRSAVENPDVVVVIDETLLSPAIVEGLSEDGILLVNTVKDFEFVRKKTGFNGKICVVDATDIALQEIKRGIPNTPMLGALVRVTGIVPLEAIEKRIEKMFGKKFPQEVIDANKRALRRGYEEVKCSELast
1 -52.900PF01558.16; Q67PU1_SYMTH/11-175; Pyruvate ferredoxin/flavodoxin oxidoreductase  ali follow..  21  1.............GEQGSGLDSTAEVFNTVASRAGYYVYAYKTFASRIKGGHTDFTTRISVERVQAP--ASGVNLLVVLDQESIDL-CAKNVYPGAIILAEESFEPKL---PEGIDARLLTMPFNKMALALGNTLMKNNLVLGASAALLG-LPLEGFKAYAQRRWGTR-GAEFVALIHQAMDQGYQ...... 165
2 -6.340PF07015.9; Q1M9M0_RHIL3/1-231; VirC1 protein  ali follow..  14  10..............KGGAGKTTALMGLCSALAADGKTIALFEA---DENRPLSKWKENATRRVAYEEAAGRGFDYCLVETHHGSSELNNTVIASSNLLLIPTMLTPLDADEALA------TFRYIIELLIGENLAIPAAILR.................................................. 147
3 -6.330PF09140.9; Q9A6C9_CAUCR/5-268; ATPase MipZ  ali follow..  11  9..............KGGAGKSTIAVHLVTALLYGGAKVRTSARFFENRRA-PEPLALNLSDNDVALAERPEEEDFILIDTPGGDSAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELEGRKQRALSGQRQAMDWVVLRNRLATTEARNRKRLEDRLNALAKRVGFRIGPGLRDRVI........... 219
4 -6.110PF09835.7; C7LRN6_DESBD/9-156; Uncharacterized protein conserved in bacteria (DUF2062 topsan)  ali follow..  11  21...........................IALGLALGVFAGALPFLSLQMAIAVALAFVMRGNIIAAA--------LGTWWSNPFNWALIFPLLYMLGKVFVPVDVAHLSIHEFLNLPLLELLQRSWKWLLIT----TLGGFIAGIPLAMITYFVTLRAVLIYHDR............................ 145
5 -5.970PF06309.9; O45271_CAEEL/5-130; Torsin  ali follow..  17  50....QKPLVLSFHGGPGTGKNYVTEIIAKNTFRSGLQSPYVKYF.................................................................................................................................................... 89
6 -5.770PF13671.4; B2JHT3_BURP8/20-178; AAA domain  ali follow..  11  2.........VFICGHAGTGKTTLAKRLIGPLMKATGEACCLLDKDTLYGVYSAAAIGALTGDPNDRDSPLFLQHFRDPEYRGLFDT-AAENLRLGIGVIAVGPLSREVRERRLFDHVWLGVPKDAKISV............................................................... 120
7 -5.770PF10609.7; A2SRE7_METLZ/34-283; NUBPL iron-transfer P-loop NTPase  ali follow..  18  7.........LVLSGKGGVGKSTVSVNLAYALSNHGYQTGLLDL---DIHGPSIGKMLGIEDLRVSMALLLNETDSPVVWRGPMKAAATKQFLGD-DYLIVDLPPGTGDIQFAPNVEGAVIVTTPQDVAVLDATKAIMDLSVLGVIENMSGMV........................................ 180
8 -5.750PF13521.4; A4CIV1_ROBBH/14-173; AAA domain  ali follow..  13  1........KVVLFGPESTGKTTLARELA-----RHYGEPWVPEYA-QEKWDRVQQTCAPEDQMRLENIGAREASRLLICDTDLLETKVYS...................................................................................................... 87
9 -5.560PF05496.10; RUVB_SOLUE/5-238; Holliday junction DNA helicase ruvB N-terminus  ali follow..  13  28...............GQSKLKENLSIAIEAARMRGEAMDHVLLYGPPGLGKTTLASIIAEELQVQFTPT--------VLQKKLDLTGILSNIRLHQVFFIDELPDVEEMLYSALEDFRVDILVGVGPGARTHSLPMPKFTAIGATTRQ............................................ 159
10 -5.550PF14272.4; Q5WI60_BACSK/10-123; Glycine-rich SFCGS  ali follow..  26  42MDTENADIGISFCGSGGAGAITAQTKYGYTAINEGKKVLGFGFMDTEELGKRI........................................................................................................................................... 107

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.