current user: public




Query: TM0015 TM0015 281896 PDB-2007-09-14, from T.maritima

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190
# Score Template Links and tools%idFirst MPVAKKYFEIRWHGRAGQGAKSASQMLAEAALEAGKYVQAFPEYGAERTGAPMRAFNRIGDEYIRVRSAVENPDVVVVIDETLLSPAIVEGLSEDGILLVNTVKDFEFVRKKTGFNGKICVVDATDIALQEIKRGIPNTPMLGALVRVTGIVPLEAIEKRIEKMFGKKFPQEVIDANKRALRRGYEEVKCSELast
1 -59.600PF01558.13; Q31EX2_THICR/20-185; Pyruvate ferredoxin/flavodoxin oxidoreductase  ali follow..  20  1...............GGTGAVTVGLILLEAVAKAGFYGVMTRSFGPQIRGGESAVMLNLSDQPIETL--AEFSHIHLALDWLKFERADEIPLTQDSLVIYDNCREKPP-GLVESSGAQLIGVALQNAVKTIQG-SRMNMFALGVLAHQIG-LDSTFIEAALKKTLGKK-GDAVITPSLEAVQAGRQ...... 166
2 -8.940PF03435.13; A1SAY3_SHEAM/14-443; Saccharopine dehydrogenase  ali follow..  12  1.........ILIVGFGSIGQGLLPLILRHIDITPQKICII--EEAGKLGIRFIEMPLTRKNYQSELTPLVGKDDFLVNLSVDVSSIALVEFCQARGARYLDTCIEPTDPSKSFAARSNYALRERVLALKDKYRGGPTAVVAQGANPGMVSHLVKQALMNLQQDI............................ 165
3 -6.700PF04034.8; Y554_METTH/41-168; Domain of unknown function (DUF367 topsan)  ali follow..  16  2..........................................................................VLNPFSEKAVSPEDRDMVLRRGIAALDCSWKKKKSSVIFQTARNHRSLPFLVAANPTNYGKPCILSTAEAVAATLYIVGLKDIASDIMSYF--KWGPHFLDLNRELLEA......... 109
4 -6.240PF08003.6; CMOB_VIBVY/7-322; Protein of unknown function (DUF1698 topsan)  ali follow..  10  116......................KNRSVLDVGCGNGYHMWRMLGEGARLCVGIGDQRAHLLPLGIEQLPKLEAFDTVFSMSPLDHLIQLKDQLVSGGELILETL--------VIEGDETAVLVPKERYAQMRNVYFFPSARALKVWLELVGFEDVRIVDENVTSVDEQRTTNWMTHNSLPDYLDQNDPSKTVE 302
5 -6.210PF13671.1; B2JHT3_BURP8/20-178; AAA domain  ali follow..  11  2.........VFICGHAGTGKTTLAKRLIGPLMKATGEACCLLDKDTLYGVYSAAAIGALTGDPNDRDSPLFLQHF---PEYRGLFDTAAENLRLGIGVIAVGPLSREVRERRLFDHVWLGVPKDAKIS----------------------VVWVSTSEETARERIAARGNP..................... 140
6 -6.130PF01225.20; MURC_BDEBA/7-106; Mur ligase family, catalytic domain  ali follow..  13  1........KFHFVGVGGIGMCGLAELLHNIG---------AKVSGSDQAENANTERLKELGVKVHASSNVGDADVVVYSSAIQYGNPEISEARARQIPLIPRAEALAEIMR................................................................................. 97
7 -5.810PF00455.17; A9CFA5_AGRT5/77-236; DeoR C terminal sensor domain  ali follow..  11  6...............................................................................KKRAIARKAVDLCNDGDAIILNGGTTTFQMVHYMAARRLQVMTNSFAIAEHLVKHSKCNVNVPGGAIYRDQSLILSPFENDAIRNF........................... 91
8 -5.750PF04413.11; Q1YUP8_9GAMM/31-214; 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)  ali follow..  18......................SKETIWLHAVSVGETLAAVPLVKALQEKYPITCMTPTGSERITAAFGDSVDHSYAPYDTPDAVARFLKRVQPKMLIIMETELWPNTVAACYKRQIPVILANGRLSEKSARGYARVSKLSGPMVAQLSAVAAQHGDDGGRFIALGLPVEKLHITGNIK............. 179
9 -5.650PF07098.6; A7GMA2_BACCN/11-115; Protein of unknown function (DUF1360 topsan)  ali follow..  13  1...........................................................................................................................................IFAFATFRLTRLIVYDKITAFLRAPFIEELEITEPDGSVSTYTK......... 44
10 -5.350PF07362.7; A3J7N2_9ALTE/14-85; Post-segregation antitoxin CcdA  ali follow..  17  2.....................................................................................................................................KKATNLSVNSDLLSKTRALNINTLERALREELAKRKAAQWADENRAAITSYNEFVEQ.. 61

FFAS is supported by the NIH grant R01-GM087218-01
5 7 2 0 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.