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Query: TM0020 TM0020 281901 Purified-2001-08-24, from T.maritima

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIELDYLTIAFGGAIGAVLRYLVSRTINSLLPFSYIPLGTIIVNSVGSFFLSFLMFAAIEKVPLSKEAILFFGTGLLGAFTTFSTFTYETLSLIEESPARGVAYALANLLFAFTCAYFGMILGRGKVLast
1 -6.740sp|Q9GZU1|MCLN1_HUMAN Mucolipin-1 OS=Homo sapiens GN=MCOLN1 PE=1 SV=1 (Range: 43-298)  ali follow..  3..................LKYFFMSPCDKFRAKGRKPC-KLMLQVVKILVVTVQLILFGLSNQLAVTFREENTIAFRHLFLLYSDGADDTFAAYTREQLYQAIFHAVDQYLALPDVSLG........ 103
2 -6.720sp|Q6ZR62|ZCH16_HUMAN Zinc finger CCHC domain-containing protein 16 OS=Homo sapiens GN=ZCCHC16 PE=2 SV=2 (Range: 1-136)  ali follow..  12  64..........FHGDPANCSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQLESCGIISGPDKSTL-----------LKQYENLILEFQQSF................................. 136
3 -6.700sp|Q8N5Q1|F71E2_HUMAN Protein FAM71E2 OS=Homo sapiens GN=FAM71E2 PE=5 SV=3 (Range: 1-93)  ali follow..  11  25..................................................................ELQKTLQKGEYLPLRPLPMFESNFVQVTHQGGPVFVNHRTNRLAMGVAASLPGLVLPDILL 85
4 -6.640sp|A6ZKI3|F127A_HUMAN Protein FAM127A OS=Homo sapiens GN=FAM127A PE=1 SV=1 (Range: 30-113)  ali follow..  4..........FDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIKKESPL-----------LNDYRGFLAEMKRVFGW............................... 78
5 -6.590sp|Q8TDD5|MCLN3_HUMAN Mucolipin-3 OS=Homo sapiens GN=MCOLN3 PE=2 SV=1 (Range: 38-285)  ali follow..  1..............MRRKLKFFFMNPCEKFWARGRKPW-KLAIQILKIAMVTIQLVLFGLSNQMVVAFKEENTIAFKHLFKGYMDRMDDTYAVYTQSDVYDQLIFAVNQYLQLYNVSVG........ 105
6 -6.550sp|Q9GZV3|SC5A7_HUMAN High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=2 SV=1 (Range: 462-540)  ali follow..  19  16...................................FPFKTMVTSFLTNICISYLAKYLFESGTLPPKLDVF........................................................ 53
7 -6.520sp|Q8IYT1|FA71A_HUMAN Protein FAM71A OS=Homo sapiens GN=FAM71A PE=2 SV=2 (Range: 1-90)  ali follow..  27..................................................................KLQRQLYKGEYDIFKYAPIFESDFIQITKRGEVIDVHNRVRMVTMGIARTSPILPLPDVML 87
8 -6.520sp|Q96KD3|F71F1_HUMAN Protein FAM71F1 OS=Homo sapiens GN=FAM71F1 PE=2 SV=1 (Range: 1-137)  ali follow..  11  58..................................................................LLCRVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVYKASNTMALGVTSSVPCLPLPNILL 118
9 -6.440sp|Q9BWD3|F127B_HUMAN Protein FAM127B OS=Homo sapiens GN=FAM127B PE=1 SV=3 (Range: 31-113)  ali follow..  3..........FDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIRKESPL-----------LNDYRGFLAEMKRVFGW............................... 77
10 -6.360sp|Q8TC56|FA71B_HUMAN Protein FAM71B OS=Homo sapiens GN=FAM71B PE=1 SV=2 (Range: 1-90)  ali follow..  11  30....................................................................RQLYNRGEYNIFKYAPMFESNFIQINKKGEVIDVHNRVRMVTVGIVCTSPILPLPDVMV 88

FFAS is supported by the NIH grant R01-GM087218-01
9 9 0 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35