current user: public

anford Burnham Prebys Medical Discovery Institute

Query: TM0020 TM0020 281901 Purified-2001-08-24, from T.maritima

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MIELDYLTIAFGGAIGAVLRYLVSRTINSLLPFSYIPLGTIIVNSVGSFFLSFLMFAAIEKVPLSKEAILFFGTGLLGAFTTFSTFTYETLSLIEESPARGVAYALANLLFAFTCAYFGMILGRGKVLast
1 -8.280PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;  ali follow..  73.......................WLALTLQSVEDETEYIVLSVNLESMDALDLPDRTFIDVNHYPDAMEFLETNNL-SGFVEYPMAVLNLPLLYQ................................ 152
2 -5.770PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  21LTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVIMMPFFFLAMYEKNGQPLEVILEHMIQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQ............................. 123
3 -4.810PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  13  13.................................EYCPAPGQFTNKLPEINNTMSAEERLKACEEQLEDGNLVCLGAAGGYITVA........................................... 63
4 -4.500PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  83...............................................................FVEPLTYFPILGSAAMYQAFMIGNISNKLVSKRGDLAAVMAIGGAATMHLLSLLIFVGFLGTWL 161
5 -4.040PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  14  32FLLRIAVVDGQGGGIGKHITARLRQELPP--EVEILALGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAITGSLAIILADAMLGELTPAMAAAIAASPARKFLLPI.................. 138
6 -3.560PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  36....TIHAFALDTAGLGSYKFTIDQLSREIYNEDSLPVHADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSIDLREPLTIKVWSTEALAGISPNQTKEYTI..................... 137
7 -3.350HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  13  1.....................................................MSKKKRGEERMKEEDNILKKVGKKNSFKVFENLTSEVMGKLPEKEGPAFMWIRMKPLLYMAAMFIGAALIIRVA 85
8 -3.260PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  12  3..........................................................IDKGGPEAHFKRYIKEHVKGKTGLFITLGADP----AGEHGESMLKVGRELLNEGGNEILAEFICQGAI 68
9 -3.250HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  14  8.........................................TFAMMGTFVIGFFVAGVIKLIASAAD-----------SLAFYSSHQEELARLKRIRKLHQKVATLI.................... 63
10 -3.060PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  11  64.KLWDHLFIMSNFKLDVDTPYPMIAVLGRKPERVPYNHNKLKYKHYGKNINLLIEQAIKEDGAEKEDAIIYLGRLMKRLYSTWNKENVDDEVIVEHLSELSKNNLQIDI.................. 174

FFAS is supported by the NIH grant R01-GM087218-01
9 6 8 0 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.