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Query: TM0020 TM0020 281901 Purified-2001-08-24, from T.maritima

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIELDYLTIAFGGAIGAVLRYLVSRTINSLLPFSYIPLGTIIVNSVGSFFLSFLMFAAIEKVPLSKEAILFFGTGLLGAFTTFSTFTYETLSLIEESPARGVAYALANLLFAFTCAYFGMILGRGKVLast
1 -65.200[D] COG0239 Integral membrane protein possibly involved in chromosome condensation  ali follow..  29  1...MYFLYVGIFGALGGMCRYAMNLWLGG----GDFPSATLAVNLIGCFLLAFIMPFLAEKSRISLVLLNGIGTGFIGAFTTFSAFSVDTIELLQQGEVLAISYILVSLIGGLVMVKFGRRFSNKLL 121
2 -8.220[S] KOG2889 Predicted PRP38-like splicing factor  ali follow..  15  14...............GTNPQFLVEKIIRQ--------------RIYDSMYWKEHCFALTAELVVDKGMDLRYIGGIYAGNIKPTPFLCLALKMLQIQPDKDIVLEFIQQEEFKYIRALGAMYLRLT. 110
3 -8.180[T] KOG4293 Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains  ali follow..  11  216MNMFGWGILIIVGAI--VARHMKQWDPTWFYAHIALQTTGFLLGLTG-VICGLVLENRLKANNVSKHKGLGITILVMGVLQMLALLARPDKQSKYRKYWNWYHHNILLIILAISNIFYGIHLAKA.. 339
4 -7.990[S] KOG4147 Uncharacterized conserved protein  ali follow..  18  6......................................VTITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVF---NLPPPFRNYKYDALKIIHQAHKSKTNELVLSL.................. 82
5 -7.950[R] KOG2888 Putative RNA binding protein  ali follow..  14  28...............GNESSMNLNALIANIQSSSYFKVHLFKLKTYHEVVVKHMEPWERGSRKTSGQTGMCGGVRGVGAGGIVSTAYCLLYKLYTLRLTRKQINGLLNHTDSAYIRALGFMYLRYT. 145
6 -7.650[S] COG3952 Predicted membrane protein  ali follow..  10.....LYPLGFLASLFFGSAFSIQWWLSKKRKEVYAPRSFWILSSIGATLMIVHGTIQSQ------------FPVTVLHVINLIIYLRNLNITSSRPISFRATLVLMALSVVFVTLPF......... 110
7 -7.440[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  14  9....STAGPGPSGGPGGGGGGGGGGGGTE----------VIQVTNVSPSA-------------SSEQMRTLF--GFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPD--AVVAQHLTNTVFVDRAL 105
8 -7.340[T] KOG2290 Rhomboid family proteins  ali follow..  13  656..LWLSLFLHAG-LVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAE-------------VGPAGSQ--FGILACLFVELFQSWQILALAVVLFLFTFGLLGFISGLFLSFAFL 787
9 -6.990[KB] KOG3265 Histone chaperone involved in gene silencing  ali follow..  10  2ASRVNIVQVQI-AMFVDKFKMEITFEVFEHLPHD-LEWELVYVGLVGPIPEGRHKFVFDAE---HPDISKIPVEDIVGVSVLLLRCKYNDQEFINMGWFVANEYTDEEL.................. 123
10 -6.940[S] KOG4556 Predicted membrane protein  ali follow..  13  36FDFVQIVLLISGGATQKRRPLLYTLLSSNAL--------SVTINVL-LWYIGV--PYLSAGLPYSSSFFLRFTPYCDAEFDVIRKKWVQKQCLIP--YSVEASQAILHIIFAIVTSIFSILVIVEL. 159

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.