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Query: d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}, from SCOP206

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TRPRVGHIQFLNCLPLYWGLARTGTLLDFELTKDTPEKLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVGCDGPVMSCVIVSQVPLDRLDGARVALGSTSRTSVRLAQLLLSERFGVQPDYYTCPPDLSLMMQEADAAVLIGDAALRANMIDGPRYGLDVHDLGALWKEWTGLPFVFAVWAARRDYAEREPVITRKVHEAFLASRNLSLEEVEKVAEQAARWEAFDEDTLAKYFTTLDFRFGAPQLEAVTEFARRVGPTTGFPADVKVELLKPLast
1 -5.240sp|Q9Y4C2|F115A_HUMAN Protein FAM115A OS=Homo sapiens GN=FAM115A PE=1 SV=3 (Range: 842-921)  ali follow..  13  2...................................................................................................................................................................................................EPFIRLFTEYRNQTNLPTENVDKMNLWVKMFSHQVQKNLAPFFEAWAWPIQKEVATSLAYL..................... 62
2 -4.920sp|Q9UGT4|SUSD2_HUMAN Sushi domain-containing protein 2 OS=Homo sapiens GN=SUSD2 PE=1 SV=1 (Range: 613-716)  ali follow..  14  11..................................................................................................................................................................ELFLFGANWT----VHNASSLLTYDSWFLVHNFLYQPKHDPTFEPLFPSETTLNPSLAQEAAKLCGDDHFCNFDVAATGSLSTGTATRVAHQLHQRRM................. 104
3 -4.750tr|B4DK02|B4DK02_HUMAN Uncharacterized protein OS=Homo sapiens GN=FAM115C PE=2 SV=1 (Range: 738-815)  ali follow..  2...................................................................................................................................................................................................EPFTQLFAEYQTLSHLPKDNTGRMNLWVKKFSEKVKKNLVPFFEAWGWPIQKEVADSLASL..................... 62
4 -4.750sp|A6NFQ2|F115C_HUMAN Protein FAM115C OS=Homo sapiens GN=FAM115C PE=2 SV=2 (Range: 842-919)  ali follow..  2...................................................................................................................................................................................................EPFTQLFAEYQTLSHLPKDNTGRMNLWVKKFSEKVKKNLVPFFEAWGWPIQKEVADSLASL..................... 62
5 -4.580sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=2 (Range: 1761-1892)  ali follow..  12  1..LAISHASHFLQPPPHQSIIHSGARRFVTLDFGRPILLTDVLIPTCGDLASLSIDIWTLGEEV----RRLVVATDISTHSLILHDLIPPPVCRFMKITVIGRYGSTNARAKIPLGFYYG............................................................................................................................................................. 120
6 -4.500sp|Q8N766|K0090_HUMAN Uncharacterized protein KIAA0090 OS=Homo sapiens GN=KIAA0090 PE=1 SV=1 (Range: 368-530)  ali follow..  4..........................................................................................QTYTINLYLVETGRRLLDTTITFSLEQSGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGKVVL--------WSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLAR...................... 160
7 -4.390sp|O00562|PITM1_HUMAN Membrane-associated phosphatidylinositol transfer protein 1 OS=Homo sapiens GN=PITPNM1 PE=1 SV=4 (Range: 909-1022)  ali follow..  12  8...................VTSNHRASDTVVCEGRPQVLSGRFMYGPLDVVTLTGIMTQPLSGKWIHFGTEVTNSSGRLTFPVPPERALGIGVYPVRMVVRGDHTYAECCLTVV................................................................................................................................................................... 108
8 -4.300sp|Q8NEL9|DDHD1_HUMAN Phospholipase DDHD1 OS=Homo sapiens GN=DDHD1 PE=2 SV=2 (Range: 255-319)  ali follow..  17  6..............................................................................................................................................................RGGLYEVDVTQYWNQADKIPVMRGQWFIDGTWQPLEEEESNLIEQEHLNCFR................................................................... 63
9 -4.290sp|Q8N9M5|TM102_HUMAN Transmembrane protein 102 OS=Homo sapiens GN=TMEM102 PE=1 SV=1 (Range: 91-164)  ali follow..  21  4..........................................IREGSLDLGHAPLGPYARGPHGFTLL-------------------VPMFSLDGTELQLDLESCYAQVCLPEMV.................................................................................................................................................................. 60
10 -4.240sp|Q96JG8|MAGD4_HUMAN Melanoma-associated antigen D4 OS=Homo sapiens GN=MAGED4 PE=2 SV=3 (Range: 632-695)  ali follow..  24  3............................................................................................................................................AQMNIGDEALIGRWSWDDIQVELLTDFGDAWAR-----IPFAFWARYHQYILNSNRANRRAT........................................................................... 64

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35