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Query: d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}, from SCOP206

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PSVYDAAAQLTADVKKDLRDSWKVIGSDKKGNGVALMTTLFADNQETIGYFKRLGDVSQGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKFAVNHITRKISAAEFGKINGPIKKVLASKNFGDKYANAWAKLVAVVQAALLast
1 -8.570PG9814B NP_284435.1 372229 Purified-2006-12-13  ali follow..  10  6..........THDVRRFFARVWQQRLNPLQLSALEKALRIIEAHPEYHRYLERIEDHLDTDWLPENGESNPFLHMSLHLSVQEIDQPHGIRAIHDTLCAKRGWLEAEHEMMEALAETLWTAQRYGTGLDV--NFYMTRLRKLIGL. 142
2 -8.490PE00071B YP_208077.1 368157 Crystal|NMR-2006-08-05  ali follow..  6..........THDVRRFFARVWQQRLNPLQLGALEKALRIVEAHPEYHRYLERIEDHLDTDWLPENGESNPFLHMSLHLSVQEIDQPHGIRAIHDTLCAKRGWPEAEHEMMEALAETLWTAQRYGT--GLDVNFYMTRLRKLIGL. 142
3 -8.240PL10453A YP_384072.1 401473 Crystal|NMR-2009-10-09  ali follow..  4..................GGLHNGSGGMESARHCRELVERWLADGSFDARLPEVVRLRGVLQPEQYHAEGTHTMLAMEAVPDDADPRVFWGVLLHDIGKGHAEAGAG------EVSAIMTRLGFPHLAADVT.............. 128
4 -7.970SP19120A NP_249151.1 413330 Selected-2009-11-12  ali follow..  57......TGQLGVSQEQAVGGTGALLGLAKNQLAGNDYSQLVKTIPGLDKLAGNNALAGLGGLGNVLGKSG-GDSKGLGSLLGNADSMGDVNKAFGTLG-------MDSGMTEKFAQVLVDYFGKQGANSELLGSLSNLWG...... 182
5 -7.660WT2637A.CSTF3 BC108319 422887 Selected-2010-11-11  ali follow..  7...TEQAAEYVPEKVKKAEKAWSILIREAQNQPIDTYERLVAQFPSSGRFWKLYIEAEIKAKNYD------KVEKLFQRCLMKVLHIDLWKCYLSYVRETK---GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKG.. 152
6 -7.270RH20319A CHUT_08NOV04_CONTIG199_REVISED_GENE2640 416011 Selected-2009-12-04  ali follow..  280..........VKKTPEFKKEFFAKVFFSTENRLYKFRKIFDSLFPTVSKIISFYKEKNYKDLSIELQRLESEVM--ISNVAKNLIDLEVNEFI-----TIHDAIYCTNEFYNVVRAEVISSFHNFGLNANIK.............. 394
7 -7.240RH20096A ZP_01961931.1 415314 Selected-2009-12-04  ali follow..  184.TPSEEVSAAEEEDDSCFTETLAKIKQQRYSKALEIIKKLSLKYPKKNAYFAQIRFLEKLIINANSK............................................................................... 252
8 -6.890PK9814B YP_413382.1 389379 Crystal|NMR-2008-06-26  ali follow..  6..........RDQARQFFFETWRKYKQREMLSAMEMALEVILQHPEYHALLDDVEHHQDRDYPPEMGETNPFLHMGMHIAIKEIDQPAGIRARFERLLKKGNEHAAMHQTMECLAEMIWQAQRNRT--TYDVMVYFECLDRQGI.. 142
9 -6.680PG9814A YP_557723.1 372221 Purified-2006-12-05  ali follow..  10  6..........RDEVRLFFTDTWRKQRQGEILTPLEIAADWIVEHPEYHADLTDGEAAQAQDYSPERGQTNPFLHLSMHLAITEIDQPPGIRAAHERLAARGSTHEAQHAIMDCLGETIWEAQRTGT--PPDTDAYLQRIERRAT.. 142
10 -6.560PU9814B YP_545107.1 381752 Crystal|NMR-2009-02-20  ali follow..  11  8..........RDQVRQFFFDAWAKFQQQQALTDLEIAVDIIQAHPEYHHVLEAPEQYLEQSYFPEMGETNPFLHMSLHLSVLEIDQPPGIHAAYHALARKGSVIEAQHALMDCLAEAIWQAQRSST--GLDAQAYAACIEAKAR.. 144

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.