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anford Burnham Prebys Medical Discovery Institute
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Query: d2qrwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}, from SCOP206

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAFLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLVNSPFLast
1 -8.490TM0603 TM0603 282476 PDB-2004-09-16  ali follow..  18  1............MAYVKERIYESM----IIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMG-----MRKFAYEIKKFNEGDYFRCDGQNLQELE............................ 82
2 -6.290FR14945A YP_553298.1 392808 Purified-2009-05-26  ali follow..  13  33........GRDELRQLMHRVGSRFAAA---HPLPACESTAELARTLNLYWHDMDWGYVELADEAESLRIVHYCAPLQAFGGTALAWTPAFLEGV................................ 115
3 -6.210SP18581A ZP_03313043.1 410618 Purified-2010-11-20  ali follow..  18  1.............................................MKAFCGPRPGGPGALAALRGPKFLSLRMHPFSGRASLKQEFPKKHRPRAAGTEAPAAAPAAEKKHFPLLTPPSAMLITTPY 87
4 -6.000SP19338A YP_001087224.1 410031 Selected-2009-11-12  ali follow..  11  41.QIWHYYNGQMAFDKLVKEFNDTVGAEKGIIEAFSQGNVVDLSEKVLDSANKKVGSEDV-------PNIFAAYSDTAYEMDKLGL----LVDMDKYISKEELNEYIDEYVEEGRINSKDEFKLFPI 157
5 -5.970SP18745A ZP_02031287.1 413049 Purified-2010-09-29  ali follow..  21  11.............................................AFAFIRDKVGLGRSYLKDNCHATVQPAHRPFAFSRKPFRPWSKALSTLVKNL............................. 64
6 -5.930MI15997C NP_952095.1 399670 Purified-2009-09-10  ali follow..  12  19.........HRELFARFHRLMDALTGGT------ARHELLETIAFLESYAENHFREEESLQQECHYPDAGFHR-------MAHETFRRQLGDITASLAEQGVTNLLVIETGRTLF........... 111
7 -5.900SC.B21050A YP_002547146.1 428395 Selected-2013-01-04  ali follow..  10  75TTWRSVLGQREREPDLRLFFSAEVSRIGIEAAL---------KHYLPDLAPGVAAS---------HALMRTAYGVLRQNQGDIAIALAYWAATYLALPPATGASPVTDDPAEVLRRVTL....... 177
8 -5.840GD5922A YP_001300731.1 388097 Purified-2008-03-10  ali follow..  13  147.........IKQVPRLLQSTQQVLDSGKIYEYLHPFRDGNGRLGRLMSNFI----------------LLKKEQPLLIIPGSQREEYITALKYIKKERTDEFLIDFFFRTSIKRMEQEIEEKKNL.. 257
9 -5.820SC.B21050B MMAG_12JAN01_CONTIG3686_REVISED_GENE501 427598 Selected-2013-01-04  ali follow..  15  81GNWTTALGRREREPDLRLYFAAEVARLGIDGAL---------RCHLPVLAPGIAAS---------HALMRTAYGVFRTSETDVAIALAYWAATYLPLPPSTGAPPITADPAEVLRRVAS....... 183
10 -5.580SP18899A NP_253650.1 413165 Selected-2009-11-12  ali follow..  14  28..................QLY-------QLDVGAAAVPKKDGGAAVLL-------GPVQLADYLKRDVMVQRQADGILSLSTDARWAGNLETNVSQQLLRQMSSELGSS................. 104

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.