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anford Burnham Prebys Medical Discovery Institute
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Query: d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]}, from SCOP206

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst GLTAAQIKAIQDHWFLNIKGCLQAAADSIFFKYLTAYPGDLAFFHKFSSVPLYGLRSNPAYKAQTLTVINYLDKVVDALGGNAGALMKAKVPSHDAMGITPKHFGQLLKLVGGVFQEEFSADPTTVAAWGDAAGVLVAAMKLast
1 -8.350PG9814B NP_284435.1 372229 Purified-2006-12-13  ali follow..  6..THDVRRFFARVWQQRLNPLQLSALEQKALRIIEAHPEYHRYLEDHLDTDWLPENGESNPFLHMSLHLSVQEQAGIDQPHGIRAIHDTLCAKRGWLEAEHEMMEALAETLWTAQRYGTGLD---VNFYMTRLRKLIG... 141
2 -8.210PE00071B YP_208077.1 368157 Crystal|NMR-2006-08-05  ali follow..  6..THDVRRFFARVWQQRLNPLQLGALEQKALRIVEAHPEYHRYLEDHLDTDWLPENGESNPFLHMSLHLSVQEQAGIDQPHGIRAIHDTLCAKRGWPEAEHEMMEALAETLWTAQRYGTGLD---VNFYMTRLRKLIG... 141
3 -8.060KN.B21273A.PROX1 BC024201 429645 Purified-2014-04-10  ali follow..  14  16.............................LMFFYTRYPSSNMLKTYFSDVKFNRCITSQQMEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDPERFLEVAQITLREFFNAIIAGKDVDPSWKKAIYKVICKLD 144
4 -7.040RH20544A NP_663119.1 415499 Selected-2009-12-04  ali follow..  10  8.IVKENRNVLLERWTSSVVAMLP-----------------------------GGMSHGSLVATAIAEELGVLLDAVADRSMQAAEPIMRITRILAVQDIPPSKLFMLKGMIEALPVECD...................... 100
5 -6.720SP19120A NP_249151.1 413330 Selected-2009-11-12  ali follow..  11  61GVSQEQ---AVGGTGALLGLAKNQLAGNDYSQLVKTIPGLDKLAGNNALAGLGGLGNVLGKSGGDSKGLGSLLGNADSMGD--------VNKAFGTLGMDSGMTEKFAQVLVDYFGKQGANSGSLSNLWGVSKAGGSSLL. 192
6 -6.640PL9866B NP_386101.1 401946 Purified-2009-09-11  ali follow..  14  108GLAEVERARTDGRWDAAAPPPSKATVPDDLHDALAQNAAAKMLFDELDSRNRYAILFRIHDAKKSETRAARIEKYVGMLARGET......................................................... 191
7 -6.610PG9814A YP_557723.1 372221 Purified-2006-12-05  ali follow..  6..RDEVRLFFTDTWRKQRQGEILTPLEAIAADWIVEHPEYHADLEAAQAQDYSPERGQTNPFLHLSMHLAITEQLSIDQPPGIRAAHERLAARLGSTH---EAQHAIMDCLGETIWEAQRTGTP-TDAYLQRIERRAT... 142
8 -6.500PK9814B YP_413382.1 389379 Crystal|NMR-2008-06-26  ali follow..  6..RDQARQFFFETWRKYKQREMLSAMEDMALEVILQHPEYHALLEHHQDRDYPPEMGETNPFLHMGMHIAIKEQLSIDQPAGIRARFERLLKKTGNEH---AAMHQTMECLAEMIWQAQRNRTT-VMVYFECLDRQGI... 142
9 -6.470SP19346A YP_001087987.1 410052 Purified-2012-11-27  ali follow..  36..NPNESVNNNEGYMNYYSTSYNDYESINNQFKDKEYPGNEKYLSDVKSLKKDGKTEDTELKKMNDDLIAEGERLVKDIDKRIEKL-----------KVSDEDMKKGQNDFIKLVHGTEDVGNDIGSGFRKMIKDMNDRL. 191
10 -6.370RH20244A NP_350279.1 415829 Selected-2009-12-04  ali follow..  3.ISNKTIEVLKKSWYEGRKIDISENVKFLEERGFEVLESAKRFMEEFGELKINVEKKRKDGSTKTSKHTTCIKETVGLGNSFNFGLEDYVDEKVMLIGSLYDFNIYL---YISESGRIFDSTAWVGDSVWEAFDNIINEKG 140

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.