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anford Burnham Prebys Medical Discovery Institute
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Query: d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]}, from SCOP206

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PIIDQGPLPTLTDGDKKAINKIWPKIYKEYEQYSLNILLRFLKCFPQAQASFPKFSTKKSNLEQDPEVKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQKHKTVFKVDSIWFKELSSIFVSTIDGGAEFEKLFSIICILLRSAYLast
1 -7.990PK9814B YP_413382.1 389379 Crystal|NMR-2008-06-26  ali follow..  11  6...........RDQARQFFFETWRKYKQREMLSAMEMALEVILQHPEYHALLDD-VEHHQDRDYPPEMGETNPFLHMGMHIAIKEIDQPAGIRARFERLLKKTGNEHAAMHQTMECLAEMIWQAQRNRTTYDV............. 130
2 -7.900PG9814A YP_557723.1 372221 Purified-2006-12-05  ali follow..  12  6...........RDEVRLFFTDTWRKQRQGEILTPLEIAADWIVEHPEYHADLTD-GEAAQAQDYSPERGQTNPFLHLSMHLAITEIDQPPGIRAAHERLAARLGSTHEAQHAIMDCLGETIWEAQRTGTPPDT............. 130
3 -7.820PU9814B YP_545107.1 381752 Crystal|NMR-2009-02-20  ali follow..  11  8...........RDQVRQFFFDAWAKFQQQQALTDLEIAVDIIQAHPEYHHVLEA-PEQYLEQSYFPEMGETNPFLHMSLHLSVLEIDQPPGIHAAYHALARKYGSVIEAQHALMDCLAEAIWQAQRSSTGLDA............. 132
4 -6.640SP19120A NP_249151.1 413330 Selected-2009-11-12  ali follow..  12  59.........QLGVSQEQAVGGTGALLGLAKNQLAGNDYSQLVKTIPGLDKLAGNNALAGLGGLGNVLGKSGG--DSKGLGSLLGNADSMGDVNKAFGTLG--------MDSGMTEKFAQVLVDYFGKQGANSELLGSLSNLWG... 182
5 -6.390TB5252A 13815007 358088 Purified-2004-07-15  ali follow..  2.......LSLVLTLDHRRLEGLIDELLANPNLSLYGVIWKAYKNHIYWEELFKRVTDTSLLAIIRGLETEHGWILLKQTEELLRSNEIEGAREKIREFMRVLLEHDGAEEGSIYQFLESLS......................... 119
6 -6.270RH10444A ZP_02031172.1 416318 Selected-2009-12-04  ali follow..  11  22........VRFDDVEWNRFLTMYEEVYAKAVFLKAHFFGQKFKVLKVDKVMLEYYTKLS-------DFHAQFRGIATNYNQVVKELRIHFSEMKAMALLYKLEKHTIDL----VKLSREIVELSKEMYAKWEQ............. 137
7 -6.230RH20096A ZP_01961931.1 415314 Selected-2009-12-04  ali follow..  20  193...........EEEDDSCFTETLAKIYVKQQRYALEIIKKLSLKYPKKNAYFADQIRFLEKLIINANSK............................................................................. 252
8 -5.870SP18501A ZP_03311115.1 410559 Purified-2010-09-29  ali follow..  72.............TVDAELALADAYYLDEEYVLAAETYKDFESLHPRHEALMKQFRSIDRATTILQEAHEYFARLRQVYPDSPYAKDAEEKMHTCRRLMAELYIADVFWHMEKYGPAWRRYEYVSETFPDVPEVASHAKEKSLAAY 217
9 -5.850RH10444B NP_905595.1 416329 Selected-2009-12-04  ali follow..  20.......MVRFTDTEFARFLTLFEQLQNRAAFIKARVFNETFRVIKVDRSLLDYYQKLT-------TLYGQFRSVGVNYNQTVVALKSNFTEKKAFAMLTKLEKLTLEL----AIIGGEIVQLTRKFQEKWQH............. 136
10 -5.810PJ04340E YP_614374.1 374747 Purified-2007-04-12  ali follow..  2...........................SSSNAGLDDSLRKKIIEKPG---VVLDDPNVMRALV--ANERAMGSNIVDLRGIAMERLTRLDRLEDTHRSVIAAAYENLAGTNQIHRAVLRLL-----DPESFAEFMEVLRGDLRDIL 112

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.