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anford Burnham Prebys Medical Discovery Institute
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Query: d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}, from SCOP206

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TRPRVGHIQFLNCLPLYWGLARTGTLLDFELTKDTPEKLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVGCDGPVMSCVIVSQVPLDRLDGARVALGSTSRTSVRLAQLLLSERFGVQPDYYTCPPDLSLMMQEADAAVLIGDAALRANMIDGPRYGLDVHDLGALWKEWTGLPFVFAVWAARRDYAEREPVITRKVHEAFLASRNLSLEEVEKVAEQAARWEAFDEDTLAKYFTTLDFRFGAPQLEAVTEFARRVGPTTGFPADVKVELLKPLast
1 -3.320PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  10  11.....................................................YGFAGRGQKNGCTVYQLKGEGGSGEMVCYDIAPGIQMSFNQLTMDSTFQSIAPVKKFLQIDYCIEGCYEVEY------------QNGTVSFLGEGDLCVTDLSRQVFVSSRLPLR----KYRGVTLFLEVEKAQHTLSAGFPQALAGIVNELCGKEQSLLVKSREDVERIGKLSEVDERIQAPYYWIKTMEL................................ 190
2 -2.990PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)  ali follow..  12  7..................................................................................................................................................................ELLDEAVDFCRKRGLEF----YAVNSNMPEEEADMSALRSRKVSADMYIDDRNLGGLPDWGVIYEMVHNRWSYNRYLNEIHDFERSQKVSWWKRL.................... 97
3 -2.920PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  2..........................................VCGAKVSLEILNYAEFASVTELYTDEKGCVSITIGLGDIHIRAVKGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIEDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKEDHLKVRESSYKYRPVYKDNIAHEDSIVYKESIEFNDSCVYNDSIAY...................... 235
4 -2.800PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  12  21..................................................NVEDFVSLTRVYFQSVIAVNLGITNIRFLPDVANFKRLFKVATQGGKLGLAEKSAS-----RKMLMQDYGISESFF----------KEIDTSIKKNCRTQNDVQAYLFMYQGFSSDLGNLMQWKFRMPAIF-----KKALRSMTEKTVHDVCTK-TVWKADDVHKTAAAVRQYKERLGFSEQWMSEYVYNI.................................... 194
5 -2.660PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  101YAKVWQAIMFEDTQNGDYDYNDLIIHVKNTASNHAYQHPTETWQTIEIQPIALGSCILSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKTSIEVDGKRMYAASSDIDYKSYDMVNKEN--GLAVSNGNGTFSYPQEKNSLFETYPGFSDWINGKV..................................................................................................... 291
6 -2.140PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  11  2.............................................................................................................MLSYVTPGFYDKSYVGKWMFQVMGLEYDKALKLA---EELPEQFFPETATWGL------CWHEIKWGLP---------VQENLSYQERRQAIYEKRDYHSPMTPYIMERYLENATG----FTVHIADCHDAGPLKYKPPHPNVFKAFFNGDGTLDSKKVRKLIDKLKE 147
7 -1.960HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  17  123....................................................................................INRIPTRKHNG--ILLTTPARTLLDCAVF------------------------PFPQALPIYDSALRKSLTTIEE----------------------------QSLMIQSVCDEVSVTKLLKYANPLSENGGESLMRGQITELSFGSSCWQ.......................................... 220
8 -1.920HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;  ali follow..  12  88.........................................................................................................................................................................................IALTYFKKRFSLTLAMNNPFMDNYRIGCENWNRRAGNTSYQYVNETSRMLLVKVTYGMDFGRKRKTAAKRIQNEDTDTGILKG......... 170
9 -1.840HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  6..............................................KRQRMNIFDIAKQNQEKAWQVIKNTNI--------------IQIWEDAGAKINLVGSLRTGLLMKH-------DIDFHIYSSPLNLTDSFQ-AMARLAENPSIKRIECANLLHTAEACIEWHAWYQNEENELWQMDMIHIREGSRYDGEKVAQRISEIMTDEIRETILRLKYETPETEKIIGVE------YQAVIRDGV--RDYSGFKEWRKQHPVTGVVE-------WMP 203
10 -1.720PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  3..........................................................................................EEVNQKVISLSQGVKITASVLKAAVRKFLEMDNRRKQKATQVKMAEKTGRAQEKGREKARKKIEKKKPHGKQTIKQLNAQGVQLSNIKITYGIYSLKKEVGADPPKYLVFFKAKDVDVMTAAFR---EYAGVELKKKQVKKPSVRKKLQKSVERKAKHRQRVKQRQKSRGQE............... 186

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35