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anford Burnham Prebys Medical Discovery Institute
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Query: d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}, from SCOP206

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TNDTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDIKRQVMESLast
1 -4.690PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  465......NASIEWRPGVKYGIRNGRKYPITSNSPLIKLSYNKAGIEHYFEFGVSGKFDFNVSAGTFLSNKNVYFQDYQHFGGNRTIASNYRFMDYYKYSTNTSYVSGIFHYQFRKFLLTQL-PMLRFSGVRENLFFNYLKTENSKNYWEVGYSLDNLFRI............................................................. 640
2 -2.480PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali follow..  13  61....................VLKVIQKIHEIYPEASVEN--------------GETDFIVTYEEQDGKGGVIHVAKIVMVVMISF-----------------AAFSTMAFNNDVGVTKMFGQIYELL-----TGTKSNGFTILEFMYCIGIIIGIL................................................................ 163
3 -2.340HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  10  33....................PSEEVVNFQQKYPDVK---------NVKWEILVGAYEAEFIYSGTYSENGQHIVLDKVEAQAYITQGGKWVRSEFDVTKDYQDSSSLVVPRAVRETIAKVDDV-SDRNDYFYVEFDEPDSELL--INFDG...................................................................... 160
4 -2.010PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;  ali follow..  10  133............GTVVTPRGPEGKPLRVIAYYPAIA-NFTDGIPFDFTQTNNPQQKEILYNTNTSYTIPSSGG----SDKVTIPLKFQHAYSSIDNLSGGWIKNKGKINPATGMAMQGAIQGPIGEVRTAEVLDPSGDTATVPAFMDRNVKDDDLVFTLIIDGKK....................................................... 310
5 -1.960PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;  ali follow..  13  280........................MEEEQERQRRLREQERAAQNLRRAELVAAAATPLSFSEEGVNRF-NIARAPGEVSNLGNALMTVSALMGYQDATVRNVFDLT--------------DEGVAAQVVAAFVNLMTDHTN----YVLRTYGVNIHQEL............................................................. 397
6 -1.820PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  300........DLNIAIDSENIIMP---KNLVIAHDNAVKLLYQMKHEVEEQQYKV-------------RFEKIKDLEKTIDNYAFIVPK----------QASDLLTEG-----------KALSHCVGGSNYIKQHI-----------------GKTTIIFVRDKQDLEKSLYTLEYKN---GQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVL..... 450
7 -1.760PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  11  4...DKGGPEAHFKRYIKEHVKGKKTGLFESMLKVGRELLNEGGNEILAEFICQGAIDPKVIEEMKEMAAKMGDKAIHLITPERQATWKQASTHPDENDLKNARKA................................................................................................................... 117
8 -1.720PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  151QYSYKENVQLNLEHQLVKFRV--KLNGDVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDY-----------TAMLAP-------------DTKTSNNFVKIEVYGLTYYYNPDIELVKGTVYTYTVNKVDIPY.............................................................................. 267
9 -1.570PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  20  254.......................................................................................................................LDWAVDSDGNPKHL----DHADFIRIQSGVLQQCGWTGETSTE.......................................................... 292
10 -1.540PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;  ali follow..  134........KQRQTEAVNVFATNQRLTSWNKTYPLKQVRYVHHTASMIEGIMLQKDK---------NAAEKSVFIQVEQYFLTIIVKQGKKLIFCNSFTFNTSED--FVYFILFVFDQLELNPEKCPVVVFGEITHDSESFSKLYKYIR........................................................................ 263

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.