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Query: d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}, from SCOP206

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNLGGTGFQLast
1 -53.300d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}  ali model 3D-neighbors  100  1MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNLGGTGFQ 79
2 -38.200d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}  ali model 3D-neighbors follow..  29  3.....MREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD 76
3 -36.800d2o37a_ a.2.3.0 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  17  1......MVKETKLYDLLGVSPSANEQE--LKKGYRKAALKYHPDKPGDTEKFKEISEAFEILNDPQKREIYDQYGLE.. 70
4 -34.600d2yuaa1 a.2.3.0 (A:8-93) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  8........SRTALYDLLGVPSTA--TQAQIKAAYYRQCFLYHPDRNSGAERFTRISQAYVVLGSATLRRKYDRGLLS.. 78
5 -34.100d2cuga1 a.2.3.0 (A:8-82) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  17  6......SALDFDPYRVLGVSRTA--SQADIKKAYKKLAREWHPDKNKDEDRFIQISKAYEILSNEEKRTNYDHYG.... 75
6 -33.700d3ucsc1 a.2.3.0 (C:2-73) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  14  1........ELKDYYAIMGVKPTD--DLKTIKTAYRRLARKYHPDVSKEEARFKEVAEAWEVLSDEQRRAEYDQMWQHRN 72
7 -32.800d1wjza1 a.2.3.1 (A:8-88) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  21  2...ALEQTLKKDWYSILGADPSA--NMSDLKQKYQKLILLYHPDKQSAMQKFIEIDQAWKILGNEETKKKYDL...... 79
8 -24.200d1iura1 a.2.3.1 (A:14-88) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  2.........LKEVTSVVEQAWKL--PESERKKIIRRLYLKWHPDKNPENEVFKHLQNEINRLE---KQAFLDQNADR.. 69
9 -19.400d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  2...........DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQINQAWQTLRHPLMRAEY........ 70
10 -12.500d2qwob_ a.2.3.1 (B:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  13  48...........................EQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ....... 92
11 -11.600d3ag7a1 a.2.3.0 (A:551-650) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  28  50...........................NAVRKSYQRALLILHPDK--AEKVFELLQEAWDHFNTL.............. 98

FFAS is supported by the NIH grant R01-GM087218-01
8 2 8 7 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.