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Query: d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}, from SCOP206

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst VHWTQEERDEISKTFQGTDMKTVVTQALDRMFKVYPWTNRYFQKRTDFRSSIHAGIVVGALQDAVKHMDDVKTLFKDLSKKHADDLHVDPGSFHLLTDCIIVELAYLRKDCFTPHIQGIWDKFFEVVIDAISKQYHLast
1 -23.500[C] KOG3378 Globins and related hemoproteins  ali follow..  12  257DRITERQKHIFTETFPVIEYKRNGLVLFAKYFSEFPHYKNIWPQFASNELANHCSVYMSGLK.......................................................................... 329
2 -21.600[C] COG1017 Hemoglobin-like flavoprotein  ali follow..  12  2..LDAQTIATVKATIPLLVEPKLTAHFYDRMFTHNPELKEIF-NMSNQRNGDQREALFNAIAAYASNIENLPPAVEKIAQKHT-SFQIKPEQYNIVGTHLLATLDEMFNP--GQEVLDAWGKAYGVLANVFIHR.. 134
3 -8.000[U] KOG3198 Signal recognition particle, subunit Srp19  ali follow..  11  95...........................VKRFQVLYP------CYFDINRSHKEGRRVPKELAVENPLAKTMADAVRELGLCIFEGEKCHPQDFGNPGRIRVLFKENGQLIGAATKFKGGKRQLMKAVGEYMKR... 195
4 -5.940[I] COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase  ali follow..  15  51......................LGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDKMAPHIPQMRVNLAEDLQCHMDDINVKATT..................................... 135
5 -5.810[S] KOG4528 Uncharacterized conserved protein  ali follow..  10  44.......................................EYLDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTVEPLQTVEVETQGDDFHFLDEWLYKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQ.... 164
6 -5.550[O] COG4235 Cytochrome c biogenesis factor  ali follow..  98.........MLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNRLGGELLRQL-----------------VRTDHSNIRVLS---MYAFNAFEQQRFGEAV-AAWEMMLKLL......... 194
7 -5.380[O] COG0576 Molecular chaperone GrpE (heat shock protein)  ali follow..  12  39...LTEEQAKILELENKLDEVE---NRYLRMQADFENVKKRHIADRDASQKYRSQSLAQDLLPALDSFEKALATTSDQEEVKQILKGME-----MVYNQILVAFEKEVGEQFDPNFHQAVMQD-NEITAELQKGYK 176
8 -5.340[L] KOG2994 Uracil DNA glycosylase  ali follow..  14  106.......ELLVEESWLKALPGEFHKPYAKSLSLIYPPQHLIFNALNTTPFDRHGPGQAMGLSFSVPEGEKLPSSLLNIFKELHKDVGCSIPRHGNLGVLLLNAVLTVRSKQPNSHAKKGWEQFTDAVIQSISQQ.. 263
9 -5.310[S] COG1371 Uncharacterized conserved protein  ali follow..  15  9.......................................EYLEHTADIKFLAYGNTLKEVFENAALAMFNVIIDTGKVSGETAREVCLTSPDLESLLVDWLSEL................................ 73
10 -5.240[S] COG2852 Uncharacterized protein conserved in bacteria  ali follow..  12  34.ELRRNMTDAEYALWYHLRNKLFCGIRFNRQVIIGH----YIVDFCSRKLK------------LVIELD---------GIQHVEQEQYDLERTKFLTAQGYKVIR------WNDEVLKNIDNVLEAIYVEIEHL.. 136

FFAS is supported by the NIH grant R01-GM087218-01
8 2 9 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.