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Query: gi|16763403|ref|NP_459018.1| chaperone protein DnaJ (STM0013) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-379), from S.typhimurium

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIRLAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVMLKVPSETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLSEKQKQLLKDLQESFGGPTGEKNSPRSKSFFDGVKKFFDDLTRLast
1 -6.390sp|Q5T197|DCST1_HUMAN DC-STAMP domain-containing protein 1 OS=Homo sapiens GN=DCST1 PE=2 SV=1 (Range: 596-684)  ali follow..  20  15..............................................................................................................RAAILRRERQQKAPRHPLADILHRGCPLLRRWLCRRCVVC---QAPETPESYVCRTCEAV---------------CWSC----DDMRQRCPVC................................................................................................................................................................................ 89
2 -6.110sp|Q9UBC1|IKBL1_HUMAN NF-kappa-B inhibitor-like protein 1 OS=Homo sapiens GN=NFKBIL1 PE=1 SV=1 (Range: 294-381)  ali follow..  12  28...........GPPLEEQGALRRYLRVQQVRWHPDRQIETWELGRVMGAVTALSQALNRHAEALK.......................................................................................................................................................................................................................................................................................................................... 88
3 -5.620sp|Q9BRN9|TM2D3_HUMAN TM2 domain-containing protein 3 OS=Homo sapiens GN=TM2D3 PE=1 SV=2 (Range: 63-183)  ali follow..  13  26................................................................................................................................FSCTYGKPVTFAVKPSVTCVDQDFKSQKNFIINMTCRFCW---QLPETDYECTNSTSCMTVSCPRQRYPANCTVCLG------NRTFPKMLYCNWTGG......................................................................................................................................................... 121
4 -5.440sp|Q6ZRI0|OTOG_HUMAN Otogelin OS=Homo sapiens GN=OTOG PE=2 SV=3 (Range: 2441-2829)  ali follow..  16  289.......................................................................................................................INTTSVLCDIHCEANQEYEHPRDLAACCGSCRNVSCLPGASIADCARC-----SSTPLGAVLVRSSCPECAKVGGSVVPSLEGC................................................................................................................................................................................ 389
5 -5.360sp|P17643|TYRP1_HUMAN 5,6-dihydroxyindole-2-carboxylic acid oxidase OS=Homo sapiens GN=TYRP1 PE=1 SV=2 (Range: 25-96)  ali follow..  26  3................................................................................................................................................................PRQCATVEA----------LRSGMCCPDLSPVSGPGTDRCGSSSGRGRCEA........................................................................................................................................................................ 43
6 -5.360sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2 (Range: 1539-1749)  ali follow..  11  1.....HYYATRSAAQSVKQLETVAARSVSLLRHTQLLPVDK-AAKAVGWDNMAFIFLNRLDLTDAIEEGTLDGLDHSDFQDTDIPFEVPLPAKQHV-----------PEAEREEVRDWVLTVSMDQRLEQVLPRDERGA-YEASLVAASTGVTGYPILRNKIEFKRPGKAANKDNWNKFLMAIKTSPVCQDVLKFISQWCGG................................................................................................................................................................................. 202
7 -5.350sp|Q6L9T8|FA72D_HUMAN Protein FAM72D OS=Homo sapiens GN=FAM72D PE=2 SV=1 (Range: 1-149)  ali follow..  15  17.................................................................................................................................................CCKFCKQVLSSRGMKPTNAVDFTGRCYFTKICKCKLKDIACLKCGNIGYHVIVPCSSCLLS----NNRHFWMFHSQAVYDINRLDSTGV................................................................................................................................................. 120
8 -5.320sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3 (Range: 4468-4587)  ali follow..  19  32.....................................................................................................................NRYAYYVCYKCRKAYFGGEAR--------CDAEAGRGDDYDPRELICGACSDVSRAQMKHGTDFLEYKCRYCCSVAVFFTHFCNACHDD............................................................................................................................................................................. 118
9 -5.180sp|Q86X60|FA72B_HUMAN Protein FAM72B OS=Homo sapiens GN=FAM72B PE=2 SV=2 (Range: 1-149)  ali follow..  15  17.................................................................................................................................................CCKFCKQVLSSRGMKPTNAVDFTGRCYFTKICKCKLKDIACLKCGNIGYHVIVPCSSCLPS----NNGHFWMFHSQAVYDINRLDSTGV................................................................................................................................................. 120
10 -5.120sp|Q5TYM5|FA72A_HUMAN Protein FAM72A OS=Homo sapiens GN=FAM72A PE=2 SV=1 (Range: 1-149)  ali follow..  15  17.................................................................................................................................................CCKFCKQVLSSRGMKPTNAVDFTGRCYFTKICKCKLKDIACLKCGNIGYHVIVPCSSCLLS----NNGHFWMFHSQAVYDINRLDSTGV................................................................................................................................................. 120

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.