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anford Burnham Prebys Medical Discovery Institute
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Query: gi|16763397|ref|NP_459012.1| transaldolase B (STM0007) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-317), from S.typhimurium

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTDKLTSLRQFTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQSSDRAQQVVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRIIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVYLISPFVGRILDWYKANTDKKDYAPAEDPGVVSVTEIYEYYKQHGYETVVMGASFRNVGEILELAGCDRLTIAPALLKELAESEGAIERKLSFSGEVKARPERITEAEFLWQHHQDPMAVDKLADGIRKFAVDQEKLEKMIGDLLLast
1 -7.330sp|Q9H2P0|ADNP_HUMAN Activity-dependent neuroprotector homeobox protein OS=Homo sapiens GN=ADNP PE=1 SV=1 (Range: 446-529)  ali follow..  1........................................................................................................................................WKICTCNELFPENVYSVHFEKEHKAEKVPAVANYI----------------MKIHNFTSKCLYCNRYLPTDTLLNHMLIHGLSCPYCRSTFNDVEKMAA.................................................................................. 84
2 -4.990sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2 (Range: 1073-1300)  ali follow..  15  62.......................................................................................LVMKRVSIEPNFHSLY-LNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGLAKNKPILHTDLDVKSLLLEAYVK----GQQELLYVVPFVAKVLE----SSIRSVVFRPPNPWTMAIMNVLA--ELHQEHDLKLNLKF-EIEVLCKNLALDINELKPG...................................................................... 228
3 -4.380sp|Q9BQA5|HINFP_HUMAN Histone H4 transcription factor OS=Homo sapiens GN=HINFP PE=1 SV=2 (Range: 64-128)  ali follow..  11  12.........................................................................................................................................................................................................SLDSSADLIRHVYFHCYHTKLKQWGLQALQSQADLGPCILDFQSRNVIPDIPDH.............................................................. 65
4 -4.260sp|Q9HCF4|ALO17_HUMAN Protein ALO17 OS=Homo sapiens GN=KIAA1618 PE=1 SV=2 (Range: 1270-1550)  ali follow..  12  84.VHAAKVILQVKESLGLNGDFSVLNTLLNFTDQINQELIQAKKLLQDISEARCKGLQALSLRKEFICWVREALGGINELKVFVDLASISAGENDIDVD-RVACFHDAVQGYASLLFKLDPSVDF--SAFMKHLKKLWKALDKDQYLPRKLVSLILSLM-LLSNVRAVTVEMVAHLC............................................................................................................................................. 272
5 -4.210sp|A8MW92|P20L1_HUMAN PHD finger protein 20-like protein 1 OS=Homo sapiens GN=PHF20L1 PE=1 SV=2 (Range: 943-1017)  ali follow..  10  4......................................................................................................................................................................................................................................................NLLTHIENVQNEVTSRMDLIEKEVDVLESWLDFTGELEPPDPLARLPQLKRHIKQLLIDMGKVQQI..... 69
6 -4.170tr|D6REZ2|D6REZ2_HUMAN Uncharacterized protein OS=Homo sapiens GN=CDK10 PE=4 SV=1 (Range: 1-69)  ali follow..  27  29.........................................................................................................................................RGLALSPRLECSGVQCIVSLL-SDLPASASQVLELQ................................................................................................................................................ 68
7 -4.130sp|Q9BVI0|PHF20_HUMAN PHD finger protein 20 OS=Homo sapiens GN=PHF20 PE=1 SV=2 (Range: 937-1012)  ali follow..  10  5......................................................................................................................................................................................................................................................NLLTHVESLQDEVTHRMDSIEKELDVLESWLDYTGELEPPEPLARLPQLKHCIKQLLMDLGKVQQI..... 70
8 -4.070sp|Q9NP71|MLXPL_HUMAN Carbohydrate-responsive element-binding protein OS=Homo sapiens GN=MLXIPL PE=1 SV=1 (Range: 80-189)  ali follow..  10  6.................................................................................................................TLTRLFECLSLAYSGKLV--SPKWKNFKGLKLLCRDKIRLNNAIAWYIQYVKRRKSPVCGFVTPLQGPEADAHRKPEAVVLEGNYWKRRIEVVMREYHKWRIY..................................................................................................... 108
9 -3.970sp|Q9Y2V0|CO041_HUMAN Uncharacterized protein C15orf41 OS=Homo sapiens GN=C15orf41 PE=2 SV=2 (Range: 1-281)  ali follow..  13  81.................................AAPVLLDLANEVDYAPSLMARLILERFLQEHEETPPSKSIINSML----RDPSQIPDGVLANQVYQCIVNDCCYGPLVD----CIKHAIGHEHEVLLRDLLLE-KNLSFLDEDQLRAKGYDKT-------------PDFILQVPVAGHIIHWIES---KASFGDECSHHAYLHDQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCHS.............................................................. 279
10 -3.900sp|Q9HCG7|GBA2_HUMAN Non-lysosomal glucosylceramidase OS=Homo sapiens GN=GBA2 PE=1 SV=2 (Range: 68-150)  ali follow..  21  1....................................................................................................................................LMVSYEGKAMGYQVPPFGWRICLAHEFT--QANNVSLSNMIKHIGMGLRYLQWWYRKTHVEKKTPFIDMNSVPLRQIY........................................................................................................... 83

FFAS is supported by the NIH grant R01-GM087218-01
1 1 7 8 9 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.