current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Query: gi|16763396|ref|NP_459011.1| alanine/glycine transport protein (STM0006) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-476), from S.typhimurium

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .
# Score Template Links and tools%idFirst MPEFFSFINEILWGSVMIYLLLGAGCWFTWRTGFIQFRYIRQFSRSLKGSLSPQPGGLTSFQALCTSLAARIGSGNLAGVALAIAAGGPGAVFWMWVSAIIGMATSFAECSLAQLYKERDPTGQFRGGPAWYMARGLGMRWMGVVFALFLLVAYGLIFNSVQANAVSRALHFAFNIPPLISGIALAFCALLIIIRGIKGVARLMQWLIPLIALLWVAGSVFICLWHIEQMPGVIASIVKSAFGWQEAAAGAAGYTLTQAITSGFQRGMFSNEAGMGSTPNAAAAATSYPPHPVAQGIVQMIGVFSDTIIICTASAMIILLAGNHASHSSTEGIQLLQHAMVSLTGEWGASFVALIVILFAFSSIVANYIYAENNLFFLRLHNAKAIWLLRLATLGMVIAGTLISFPLIWQLADMIMACMAITNLTAILLLSPVVYTLASDYLRQRKLGVRPQFDPRRFPDIEPQLAPDTWEAASRDLast
1 -6.840sp|Q9Y4D8|K0614_HUMAN Probable E3 ubiquitin-protein ligase C12orf51 OS=Homo sapiens GN=C12orf51 PE=1 SV=5 (Range: 1-60)  ali follow..  16  8............................................................................IGSTMSTVHLSSDGTYFWIWSPASLNEKTPKGHSVFMDIFELVVENGVF............................................................................................................................................................................................................................................................................................................................................................... 57
2 -6.420sp|Q9H015|S22A4_HUMAN Solute carrier family 22 member 4 OS=Homo sapiens GN=SLC22A4 PE=1 SV=3 (Range: 43-137)  ali follow..  14  42.......................................................................................................................................................................................................................................................................YRLATIANFSALGLEPGRDVDLGQLEQESCLDGWEFSQDVYLSTVLVCE.................................................................................................................................................................... 95
3 -5.890sp|P50221|MEOX1_HUMAN Homeobox protein MOX-1 OS=Homo sapiens GN=MEOX1 PE=2 SV=1 (Range: 1-98)  ali follow..  17  1...................................................................................................................................................................................................................................................MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTP--FSFHQKPDFLATATAAYPDFSASCLAAT................................................................................................................................................................. 70
4 -5.820sp|Q96DY7|MTBP_HUMAN Mdm2-binding protein OS=Homo sapiens GN=MTBP PE=1 SV=1 (Range: 43-120)  ali follow..  17  3..........................................................NVYHLLKRSISASINPEDSTFPACSVG-GIPGSKKWFFAVQAIYGFYQFCSSDWQEIHFDTEKD.................................................................................................................................................................................................................................................................................................................................................................. 65
5 -5.500tr|B4DMX0|B4DMX0_HUMAN Uncharacterized protein OS=Homo sapiens GN=KDSR PE=2 SV=1 (Range: 168-268)  ali follow..  16  1......................................................................................................................................................................................................................................PLETRLI-------SETTSVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSALTCGMAPVTSITEGLQQVVTMGLFRTIA...................................................................................................................................................................... 73
6 -5.430sp|Q7Z410|TMPS9_HUMAN Transmembrane protease serine 9 OS=Homo sapiens GN=TMPRSS9 PE=1 SV=2 (Range: 52-139)  ali follow..  14  9.........................................................................TAELRGIRWTSSLRRETSDYHRTLTPTLEALLHFLLRPLQTLSLGLEEELLQRGIRARLREHGISLAAYGTIVSAELT..................................................................................................................................................................................................................................................................................................................................... 86
7 -5.210sp|Q8TC57|CB065_HUMAN Uncharacterized protein C2orf65 OS=Homo sapiens GN=C2orf65 PE=2 SV=1 (Range: 22-184)  ali follow..  12  3....................................................................................................................................................LLIVHIALPSWADICTNLCEALQNFFSLACSLMGPSRMSLFSLYM------VQDQHECILPFVQVKGNFARLQTCISELRMLQ-------------REGCFRSQGASLRLAVEDGLQQ--YSRHVTTRAALTYTSLEITILTSQPGKEVVKQLEEGLKDTDLARVRRFQVV............................................................................................................................................................. 155
8 -4.800sp|Q56UN5|YSK4_HUMAN SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1 (Range: 884-1005)  ali follow..  16  46.............................................................................................................................................................................................................................................................................HDSLANKSITYQMFGKTLSGTNSISQEIMDSVN-LTDELLGCLAAELLAL............................................................................................................................................................. 97
9 -4.730sp|Q96S37|S22AC_HUMAN Solute carrier family 22 member 12 OS=Homo sapiens GN=SLC22A12 PE=1 SV=1 (Range: 1-145)  ali follow..  14  6................................................................................................................................................................................................LLDLVGGLGRFQVLQTMALMVSIMWLCTQSMLENFSAAVPSHRCWAPLLDNSTAQASILGSLSPEALLAISIPPGRFRQPQWQLLDPNATATWSEADTEPCVDGWVYDRSIFTSTILVCDSHAL................................................................................................................................................................ 144
10 -4.660sp|Q5W0Z9|ZDH20_HUMAN Probable palmitoyltransferase ZDHHC20 OS=Homo sapiens GN=ZDHHC20 PE=1 SV=1 (Range: 231-293)  ali follow..  14  2.................................................................................................CWLVGKNRTTIESFRAPTFSYGPDGNGFSLGCSKNWRQVFGDEKKYWLLPIFSSLGDGCSFP............................................................................................................................................................................................................................................................................................................................. 63

FFAS is supported by the NIH grant R01-GM087218-01
1 1 4 9 9 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.