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anford Burnham Prebys Medical Discovery Institute
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Query: gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKPKGDDSVTQLILPIRTYLast
1 -55.300PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain  ali follow..  49  1............................................................................................................................................................................................................................................................TSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAKPESIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKYMLDALKVLEGAEIRVSFTGAMRPFLIRTPNDETIVQLILPVR.. 124
2 -48.100PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain  ali follow..  29  1........................................................................................................................................NLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALCSMSAPIEQEDRQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD.............................................................................................................................. 116
3 -36.600PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain  ali follow..  27  1.MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIIDEGFAQ--------IDVPGQITAPAHTLYEIVRKLPDGDVSLSFSDDPRLVIQAGRSRFNLPVLPAGDFPVM.......................................................................................................................................................................................................................................................... 120
4 -9.470PF04139.11; RAD9B_MOUSE/14-271; Rad9  ali follow..  16  1.......................................................................................................................................................FGKAVQTLSRVSDELWLDPSEKGLALRSVNSCHSTYGYVLFSSMPLNLNCKLAIKSVLPIFRCLNYLERSVEARADKCRVVIQFFGKHGIKRTHNVYFQDSQPL-KSLCANILMIKPRLLTEAIALLTSNQEE-----VTFSVTPGNFCLKSLSGELLDLTSSVYSE---GLDTEITFCFKELKGILTFSEHAPLAIYFDFPGKPVVLSVEDMLLEANFIL..... 255
5 -8.370PF02747.13; PCNA_MOUSE/127-254; Proliferating cell nuclear antigen, C-terminal domain  ali follow..  16  2...............................................................................................................................................................................................................................................................IPEEYSCVIKMPSGEFARICRDLSHIGDA-----VVISCAKNGVKFSASG-ELGNGNIKLSQTSNVNEPVHLTFALRYLNFFTKATPSPTVTLSMSADV-PLVVE-ADMGHLKYYLAP.... 127
6 -5.410PF02144.14; A0A024R045_HUMAN/16-257; Repair protein Rad1/Rec1/Rad17  ali follow..  14..........................................................................TILKAIHFREHATCFATKNGIKVTVENAKCVQANA---------IQAGIFQEFKVQEESVTFRINLTVLLDCLS--IFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKIDFCSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFRLST--------FGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLL-----KPSTKALVLSCKVSIRTDNRGFLSLQYMI.............................................................. 242
7 -5.020PF14845.4; C9SIR1_VERA1/20-193; beta-acetyl hexosaminidase like  ali follow..  11  72......SKAVIQGAVSRSLNSIFHQNFVPWMGSGQGRVKSLSITQNSKNDSESPYTSLAEDIDESYTLSLSEEGVAEIKAPTAIGVLRALES............................................................................................................................................................................................................................................................................................. 170
8 -4.870PF11987.6; G8QW24_SPHPG/774-880; Translation-initiation factor 2  ali follow..  14  5...............................................................................................................................................................................................................................................LYSKIKEGEIQEFNVVIKGDVQGSVEALQGSLEK--------------------LSTNEIHLNVIRASAGAIIESDVTLASASNALIIGFNVRPTPRAQALAEQEKIEIRK........................... 95
9 -4.620PF16450.3; ARC_MYCA9/92-239; Proteasomal ATPase OB/ID domain  ali follow..  11  7.....................................................................................................................................................................................................................LAVQTDETVDVFTSGRKMRVTCSPNIETSELRRGQTVRLNEAL-NFESVGEISTLREVLDDGHRALVVGHADEERIVWLA--DPLIAPDLSEVSEDADGADLKPRKLRGDSLLVDTKAGYAFERIPKAEVEDLVLE............................ 146
10 -4.600PF03768.13; B4QFX8_DROSI/31-96; Attacin, N-terminal region  ali follow..  27  34......................................................................................................................................................VFAAGNTQSGPVTTGGTLAYNNNGHGASLTKTH.................................................................................................................................................................................................. 66

FFAS is supported by the NIH grant R01-GM087218-01
1 0 9 0 8 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhao Y, Hong DH, Pawlyk B, Yue G, Adamian M, Grynberg M, Godzik A., Li T. The retinitis pigmentosa GTPase regulator (RPGR)- interacting protein: subserving RPGR function and participating in disk morphogenesis. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3965-70. Epub 2003 Mar 21.