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anford Burnham Prebys Medical Discovery Institute
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Query: gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKPKGDDSVTQLILPIRTYLast
1 -5.020sp|Q8IX01|SUGP2_HUMAN SURP and G-patch domain-containing protein 2 OS=Homo sapiens GN=SUGP2 PE=1 SV=2 (Range: 297-540)  ali follow..  12........................................................................................RLPRRKMSFDIIDKSDVFSRFGIEIIKWAGFHTIKDDIKFSQLFQTLFELETETCAKMLASFKCSLKPEHRDFCFFTIKFL-KHSALKTPRVDNEFLNMLLDKGAVKTKNCFF----EIIKPFDKYIMRLQDRL------TPLLMACNAYELSVKM--KTLSNPLDLALALETTNSLC--RKSLALLGQTFSLASSFRQEKILEAVGLQDI-----------APSPAAFPNFEDSTL---FGREYIDHLKAWLVSS................................. 242
2 -4.690sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2 (Range: 1084-1172)  ali follow..  10  5ILKLLCDSVVLQPYLRELLSAKDARGMTPFMSAVSGRAYPAAITILETAQKIAKAEISSSEKEEDVFMGM................................................................................................................................................................................................................................................................................................................... 74
3 -4.140sp|Q9P2K1|C2D2A_HUMAN Coiled-coil and C2 domain-containing protein 2A OS=Homo sapiens GN=CC2D2A PE=1 SV=3 (Range: 834-945)  ali follow..  12  1..................................................................................................................................................................................................................................................................................ADAISSIGTSGLTDMKKLAKWAAESKLDPNDPNNAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSDQELN.............................. 73
4 -3.810sp|Q8ND23|LR16B_HUMAN Leucine-rich repeat-containing protein 16B OS=Homo sapiens GN=LRRC16B PE=2 SV=2 (Range: 1-120)  ali follow..  10  1.......................................................................................................................................MAKPSVELTRELQDSIRRCLSQGAVLQQHHVKLETKPKKFRVLALTSWRLHLFLLKVPAKVESS-------NVLEIRAFNTLSQNQILVETERGMVSMRLPSAESVDQVTRHVSSALSKVCP........................................................................................................................ 118
5 -3.750sp|Q5T699|CF183_HUMAN Putative uncharacterized protein C6orf183 OS=Homo sapiens GN=C6orf183 PE=5 SV=2 (Range: 132-210)  ali follow..  15  15..........................................................................................................................................................................................................................ERIAQLAQSKYLHMLRWKRFCQHSKIMEQLYPLYKKQVGY---------MQEYNDTLQRAERLSVARENFLM....................................................................................... 78
6 -3.740sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2 (Range: 989-1073)  ali follow..  18  8............................................................................................................................PNCPSSSSTNDFQANSGAIDAFCQPELDSISTCPNETVSLTTYFSVDS-----CMTDTYRLKYHQ............................................................................................................................................................................................ 67
7 -3.620sp|Q8NEA4|FBX36_HUMAN F-box only protein 36 OS=Homo sapiens GN=FBXO36 PE=2 SV=2 (Range: 1-89)  ali follow..  12  1..............................................................................................................................................MASWLPETLFETVGQGPPPSKDYYQLLVTRSQ---VIFRWWKISLRS--------EYRSTKPGEAKETHEDFLENSHLQGQT-----ALIFGARILDYVINLCKG.................................................................................................................................. 89
8 -3.490sp|Q96NH3|BROMI_HUMAN Protein broad-minded OS=Homo sapiens GN=BROMI PE=2 SV=4 (Range: 941-1070)  ali follow..  11  14................................................................................................................................KMMKAKPDIISGEALIELLEKFVLHLTESPSECYFPSVEYTATDANVKNESL-------------SSVQQLGIKMTVRYGKFLSLLKDGAENDLTWVLKHCERFLKQQQTSIKSSLLQGNYAGHD............................................................................................................................ 127
9 -3.280sp|Q8N3P4|VPS8_HUMAN Vacuolar protein sorting-associated protein 8 homolog OS=Homo sapiens GN=VPS8 PE=1 SV=3 (Range: 27-90)  ali follow..  17  23...........NDLIDDKEFDIPQVDTPPTLESILNETDDEDESFILEDPTL..................................................................................................................................................................................................................................................................................................................................... 63
10 -3.140sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3 (Range: 1330-1485)  ali follow..  33........................................................................................................................................................................................................................STKSVMDFVNSNENIIFVHNTIHLISQMVDNIIIACGGILPLLSAATSPTGSKTELENIEVTQGMSAETAVTFLSRLMAMVDVLVFASSLNFSEIEAEKNMSS.......................................................... 135

FFAS is supported by the NIH grant R01-GM087218-01
1 0 9 0 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.