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anford Burnham Prebys Medical Discovery Institute
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Query: gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKPKGDDSVTQLILPIRTYLast
1 -2.940PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  15  22...............................................................................................................................................................................................................FAAVSFTFVSCDDDMDI---QQSYPFTVETMPVPNKVTKGQTVEIRCELKKTGDFANTLYTIRYFQFEGEGTLKMDNGINDRYLLENEKFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFDFNNR------NVKDDGVITVVPIGNFKPLT................... 167
2 -1.830PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  45.......SQVAYPNTIIAGVDVSFSNASSAATKVNSAWKHYKLTVTGDDFSWTYQP--------------ESNEPIVDGEAAAKEIISHNEAFVWPVRLVESLSGKTKTTAT--------NEVDLDQDVDLSMLSDTFDQKKFEKDLGAAIDEFNEGRSGTFEANSSYDEQAGKFTVE----------------KARSNEKLNREHVIKYAELELASLAETVDLSKLGNDA-YEPLNGTLTDDQIQAACNAANNFLGVNVTLKLNGEDAGKVDGSSVLQWISFADPAN---PTLDTSQISAAELANGFNTVGSTRWWTRADGKQCAVE................................................. 326
3 -1.780PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;  ali follow..  1...........................................................................MLSDITVRYKLNNSIKDSRFETEHLAKYHLSFQVNFELFRICIVDGDSNRCLFLEDYTLADIYTTNDLLEQLDI-LFEDHILIKAGFWKSITVGFKNTQFSLIPEALFEKDYLKEYLTLNTTLDR---------------EPDEEYHFYKQRQTEAVNVFATNQRLTSWFNKTYPLKQVRYVHHTASMIEGIMLQKDKNAAEKSVFIQVEQYFLTIIVKQGKKLIF-CNSFTFNTSEDFV-----------------FILFVFDQLNPEKCPVVVFGEIT...................... 249
4 -1.670PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  55........................................................................................................................................TFPENDWPEFLQRIIKAGSSPIQHDIML--------GALTALGA-SRHVRCLYGGKYHHPSLQCFVV-GKGLSYIRLLVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERT--------KKEAPQMPPNRMFLISGNNTGTGILQNIMDSDGTGLICEAEADTLSTAIGSDHGHWSDTLRKAFDHDRLSYNRRTD------EYREVKKSYLSVLISGTPSQVQPTAEDGSYSRQL..... 279
5 -1.430PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  1.MKIERLFIYCLLAGTSLLASCNSED----------MTDNPVETLSEGMYPLTFTAMQGEVVATPQTRVSDYDDTDGKHKSKWDG------GEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQL-------------------EHQLVKFRVKLNGDVPNLSDA---KVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLAPDT-------KTSNNFVKIEVYGLTYY----NPDIELVKGTVYTYTVNKVDIPYEIIDNNGN...................................................................... 275
6 -1.390PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  11  33..............................................................................................................................................VKEGAVRSS---YGAPLPGCLPRWSLGRNARLLMVIPMDAERLLRPQAQVMEEAIRHWATVLSVRLDLDAARGKLGPEACEMERQRFDGVIAMMERNDGPTLVSQAIDVVHPWTLDRSSGRPLVPGGRLDPFVEGLEALETLQDGDRVLISEACNHNRITSACNDIGMVQIPNKLEAALGGKKEHAFGREFPELESGGMDGLKLAIHCGGCMIDAQKMQQRMKDLHEAGVPVTNY 288
7 -1.350HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  11  40..............................................................................................CYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLP---LRYTADSTVLVFHYSKDVKIKKDTIVIRQKNTPYFLSMDGYQMKQSITGRSYSRHLLDSIYIQTA-----EVSIYGTENLKLFYRN..................................................................................................................................................... 166
8 -1.180PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  10  26............LRLEILSPGWWNNEEGPDFKHAEFFLEGK--GLIRGSVEIHVFASVVMWNDLKGRCVKNFSGKVIPQITLSLYLEAELDEIIETIDVGS-KQVIPGYCNLEMRKQKITQQWIGGFLDYAGDERILQKAKKYEKWIENKPFERVLYEA--IMESLGYKNNKKPFLMLASL-QSFVPEYTPAQEKKIIAQSLLLGMALPLNEEETKRFDDETIQYFDRIFSTWQGIKPKIHQTPLTRESWSYTGIRPANFPDRRIVAIANILSEHLDNGLFRY------IFQKRDDTKKNTRGFKSFVNEFLSPFLETHDAYWSYRYTPGGKKLNKPQKLLGKERTSNIFVNVIIPVML.................. 394
9 -1.140PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  12  20................................................................................................................................................................................................NMKGQSLKDILNSSAVKNAVTSVTGGKAVTFLQLEGDNALKNVAGSLAATEAEKKMKEYCAKVGIVEGVFNYVFNSDSTF-----TSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKTVSTLTAHVVLSGNELTLLFNADKLLKFLSTVSS.................................. 179
10 -1.110PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  18........KWMFQVMGLEYDKAL-KLAEELPEQFFPETATWGLCWHEIKWGLPVQENLSYQERRQAIYE-KRDYHSPMTPYIMERYLENATGFTVHIDCHDAGPLKYKPPHPNVFKAFFNGDGTLDSKKVRKLIDKLKESHTTYFVNDYSMFEIVFSENIGLLFKIPFWKARRFDGSELWDGSHLMDAAIEYEMRLGVKYKEGEFRIAEDIERMTARAKVPLSEKMHIEKQTVSAKAFNWQSLFFDGSV------------------------PMDGNLLMNYCRADNKTTANIK--PVASISESYGNATCTVKRNLAYFDGS---------LKMNGSRLLNSLN................................ 326

FFAS is supported by the NIH grant R01-GM087218-01
1 1 7 8 7 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Alonso A, Sasin J, Bottini N, Friedberg I, Friedberg I, Osterman A, Godzik A., Hunter T, Dixon J, Mustelin T. Protein tyrosine phosphatases in the human genome. Cell. 2004 Jun 11;117(6):699-711. Review.