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anford Burnham Prebys Medical Discovery Institute
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Query: gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKPKGDDSVTQLILPIRTYLast
1 -9.690sp|Q6WBX8|RAD9B_HUMAN Cell cycle checkpoint control protein RAD9B OS=Homo sapiens GN=RAD9B PE=1 SV=2  ali follow..  15  3......................................................................................................................................KCVMSGSQVK-VFGKAVQALSR-----ISDEFWLDPSKKGLALRCVNSSRSAYGCVLFSPVTLHLKCKLGMKSILPIFRCLNSLERNIETRSDKCKVVIQFFYRHGIKRTHNICFQESQPL-KNVCTNTLMIQPRLLADAIVLFTSSQEE-----VTLAVTPLNFCLKSSNEESMDLSNAVHSE---GMDTEITFCFKELKGILTFSEHAPISIYFDFPGKPLALSIDDMLVEANFIL..... 270
2 -9.360sp|P12004|PCNA_HUMAN Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1  ali follow..  11  5................................................................................................................................................RLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEDRNLAMGVNLTSMSKILKCAGNEDITLRAEDNADTLALVFEASDYEMKLMDLDVEQLG-IPEQEYSCVVKMPSGEFARICRDLSHIGDA-----VVISCAKDGVKFSASG-ELGNGNIKLSQTSNVNEPVQLTFALRYLNFFTKATPSSTVTLSMSADV-PLVVE-ADMGHLKYYLAP.... 253
3 -8.270sp|Q99638|RAD9A_HUMAN Cell cycle checkpoint control protein RAD9A OS=Homo sapiens GN=RAD9A PE=1 SV=1  ali follow..  14  2......................................................................................................................................KCLVTGGNVK-VLGKAVHSLSR-----IGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPGQDLLRCKILMKSFLSVFRSLAMLEKCISLNGRSSRLVVQLHCKFGVRKTHNLSFQDCESL-PASCPHMLRAPARVLGEAVLPFSPALAE-----VTLGIGRGRRVILRSVTEMCLGEEDFQQLQAQ-EGVAITFCLKEFRGLLSFAENLNLSIHFDAPGRPAIFTIKDSLLDGHFVL..... 262
4 -6.590sp|Q13011|ECH1_HUMAN Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Homo sapiens GN=ECH1 PE=1 SV=2  ali follow..  12  60.........................................................VTSAQKHVLHVQLNRPNKRAMNKVFWREMVECFN----KISRDADCRAVVISGAGKMFTAGIDLMDMASDILQPKGDDVARISWYLRDIITQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKM--EALGSGLVSRV----FPDKEVMLDAALALAAEISSKSPVAVQSTKVNLLYSRDHSV........................................................................................ 287
5 -5.970sp|Q9UPR3|SMG5_HUMAN Protein SMG5 OS=Homo sapiens GN=SMG5 PE=1 SV=3 (Range: 751-1016)  ali follow..  12  1.............................................................TDRPLLSTLEESVVRICCIRSFGHFIARLQGSILQFNPEVGIFVSIAQSEQESLLQQAQAQF-AQEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMS-----------PYLVPDTQALCHHLPVIRQTSGRFIVIIPRTVIDGLDL-LKKEHPGARDGIRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQGAGEEDPSGMVTIITGLPLDNPSVLSGPMQAALQAAAHASVDIKNVL-DFYKQW............................................ 262
6 -5.850sp|O60671|RAD1_HUMAN Cell cycle checkpoint protein RAD1 OS=Homo sapiens GN=RAD1 PE=1 SV=1  ali follow..  1...................................................MPLLTQQIQDEDDQYSLVAS-----LDNVRNLSTILKAIHREHATCFATKNIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLS--IFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKIDFCSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFRLST--------FGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLL-----KPSTKALVLSCKVSIRTDNR--GFLSLQYMIRNEDGQICFVEY---YCCPDEEVPESES................................ 282
7 -5.330sp|O14926|FSCN2_HUMAN Fascin-2 OS=Homo sapiens GN=FSCN2 PE=1 SV=1  ali follow..  4...............NGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLK-TAVLLRSSHLGRYLSAEEDGRVACEAE------QPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSCFATAVSPAELWTVHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFRSRRYCLKSCD-------------SRYLRSDGRLVWEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKAGRLEESHPQVVLVAANHRYVSVRQGVNVSANQDETKKCTFYSSTGGYGIHATATQVSANTRRVALKASNGRYVCMKKNGQLAAISDFVGKDEEFTLKLINR........................ 381
8 -5.200sp|O15230|LAMA5_HUMAN(removed signalp:1-35) Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8 (Range: 3001-3300)  ali follow..  2............................................................................................KRVLVRVERATVYSVEQDADAYYLGGVPPDQLPPSLRRLFPTGGSVRGCVKGIKALGKYVDLKRLNTTGVSAGCTADLLVGRAMTFHGHGFRLALSNVAPLTGNVYSGFGFHSAQDSALLYYRASPDGLCQVSLQQGRVSLQLLRTEVKTQFADGAP----------HYVAFYSNATGVWLYVDDQLQQMKPHRGP----PPELQPQPEGPPRLLLGGLPESGTIYNFSGCISNVFVQRLLGPQRVFDLQQNLGSVNVS.......................... 254
9 -5.180sp|Q9NQT6|FSCN3_HUMAN Fascin-3 OS=Homo sapiens GN=FSCN3 PE=1 SV=1  ali follow..  11  4...........TEWIHRHPKAEDLRVGLISWAGTYLTFEACKNTVTATAKSLG-QAVVRLKSVQGLYLLCECDGTVCYGRP------RTSHHGCFLLRFHRNSKWTLQCLISGRYLESNGKDVFCTSHVLSAYHMWTPVHVILYSPIHRCYARADPTMGRIWVDAFLLHFRDGCYHLETSTHHFLSHGLVALCDGEGGMLYPQGTHLLLGMGCNPMRGEEWFILQHCPTWVSLRSKTGRFISVIYDGE-------VRAASERLNRMSLFQFECDSESPTVQLRSANGYYLSQRRHRA---VMADGHPLESDTGRIILQSCRGRFLGIAPNSLLMANVILPGPNEEFGILFANR........................ 386
10 -4.910sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2 (Range: 1-300)  ali follow..  14.....................................................................................................................GQCFESF------VRGLDMETDRERLRTIYNRD-FKISFGTPAPGFSSMLYGMTKTRVRFFRLDRWADVRFPEKRRMKLGSDISKHHKSLLAKIFYDRAEGKHGVDVEVQGP---HEARDGQLLIRLDLNRKEVLTLRLRNGGTQSVTLTHLFPLCRTPQFAFYNEDQELPCPLGPGECYELHVHCKTSFVGYFPATVLWELLGPGESGSEGAGTFYIARFLAAVAHSPLAAQLKPMTPF.................... 256

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Alonso A, Sasin J, Bottini N, Friedberg I, Friedberg I, Osterman A, Godzik A., Hunter T, Dixon J, Mustelin T. Protein tyrosine phosphatases in the human genome. Cell. 2004 Jun 11;117(6):699-711. Review.