current user: public




Query: gi|15923003|ref|NP_370537.1| hypothetical protein (SAV0013) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330
# Score Template Links and tools%idFirst MYKLLISIKEVKIIAIVKNMGVAYVFSKIQPKATIIATITLVFVALALYLVPGLGLIFALFATIPGIVLWNKSIQSFGVSALITVIITTVLGNTFVLSAIILVLIASLIIGQLLKERTSKERMLYVTTVAMSLISLIAFMLLQTFGRIPPSASIVKPFKQTLHEAITMSGADANMTQILEEGFRQATVQLPGFIIIITFLIVLINLIVTFPVLRKFKIATPVFKPLFAWQMSGILLWIYIIVIICLLFTGQPSVFQSILLNFQLVLSLVMYIQGLSVIHFFGKAKGLPNAVTILLLIIGTILTPTTHIVGLLGVIDLSLNLKRIMKNNSKKLast
1 -87.500[S] COG4241 Predicted membrane protein  ali follow..  19  2........................YQTRPLTEGAVFASLFAVLFVITFF-VPFIAFITMWFLPIPFLLYTLRHGLKPAVIVLLVAVVVMLILGPLLLLLALLFGTSGVVMGELYRREKSPFAVLLGGSLSNIAWVLLLFISSIVIMDVNPLVAAQETMRQSMQTAEQLIIGLGQEPKQMEESINQLFYLGPAMVVICGTLLAAVTQLVAAPILKRLRHEVKPLPPFRTWSFPRSFLFYYLAVVVLFMIGFEGSMPYIAVWNLLPVLEIIMAIQGFAVIFAYFHTKGVAKAVPVIIMILCIIVTPLLYLVRIIGIIDLGFDLRKRMGSQGK. 312
2 -10.500[S] COG4684 Predicted membrane protein  ali follow..  12  1...............MIKKIYGSRLQTRQITMVGLLFAVTIVLGATGLGFLP-IPPFKTTIMHIPVIIGGIVGGPIVGAITGLLFGIFSIINPVVSVLPRVLIGIVSYYVYKIIKKKSEKAGVVTGIIAGSFTNTLGVLAMIYLLY......................................................................................................................................................................................... 144
3 -9.320[S] COG3859 Predicted membrane protein  ali follow..  14  10...................MSNSKFNVRLLTEIAFMAALAFIISLIPNT---VYGWIIVEIACIPILILSFRRGLTAGLVGLIWGILSMITGHAYIL-YLIAPVSLGIAGLFRQKTASLKLVPVLLGTFVAVLLKYFFHFIAGIIF......................................................................................................................................................................................... 141
4 -8.780[S] KOG4502 Predicted membrane protein  ali follow..  14  532..............................................................................................................................................................................KTVKRSSLVYQILLSLQKTLSIVYFLVIFILYFYKGAILP----------------YPRYVRVMEFFVIIPFIPIEYLRINWGSRGNLLLALSTVLSIPIIIILVYLEFFQNYVLFIEEIFTYVMGFFVILETLLSLVLTITF.............. 663
5 -8.760[S] KOG4647 Uncharacterized membrane protein  ali follow..  10  128...............................................................................................................................AVAETIDMFILFIVKIIITFGVVNLFNIEFDEDVIRRTLDQEDLFSNFFDTSLDFISMSTDLLLIEMLTKFIVCCYEALWTYLYQGATPGKSLMKIRIYYV--PQFVLQPQREPMRALLYPPQTPSLMRSFARALIKNLGMTLLFPICVLMVFFKNNRTAYDVLTKTIVV.................................. 306
6 -7.600[S] KOG4610 Uncharacterized conserved protein  ali follow..  1..................................MAKIISTIKAILTRIIFSAHSLLAIW-------VVALKSDIIYWALCGPLLLLLL----------------GIFTIMIKKTQEWRWFCPSVFLYLSSIVPAIWLLELDKVARRVGNMTSTNSTVYSPSNYSIPVGNTTIFITSTNSSGVPPVATLLGQAGVTLSVTPDTWTTLIEQFLMLIL---------VGRWLLPKGDL---LSQLLLVYIGTAADIIEFFIAKIGFLVFLTLGIWSWSLMQFTIVLSATRGVWGIVLNVILQDAPFLTFRLLIIFQYKIINYMNVFFTCKNSL 302
7 -7.530[S] COG3601 Predicted membrane protein  ali follow..  11  1.....................MKNYSMKVFVSVAVLGTLAFILMMLQFPLLPSAPFLKLDFSDIPALIGGLLFGPLAVILVELIKNVLLYVGELANFINGIFYVLPIYYLFHWFRSTKGMVLSTAVGTLVMTGAMVIF................................................................................................................................................................................................. 127
8 -7.270[U] COG3704 Type IV secretory pathway, VirB6 components  ali follow..  12  523.MKILNDPGNNLRDYKDSEGSYKVHFSTSLKVGSFTIKVMNPL----------LQLFKTKVQGAATSIFKNMVCYKANDSSSCTNFFTYIK---AILILYVMTYGAMFLLGFA--------KINQKELVIRIAKIGVVSGLMNGNTFEFFNNYLFDAITNFSDSIIANMYSLFTSTNTISNPFMFLDAVMSKIFFSQTFIAQLLALLSLG---------------LSGIIYFIITFIAVCIVIITALRAVAVYIMAFMATCILIGIAPLF----ISFLLFDFTRYLFDNWVRFTIRYMMEPVVMMAGIIVLTQLFTIYLD........... 803
9 -6.980[P] KOG3684 Ca2+-activated K+ channel proteins (intermediate/small conductance classes)  ali follow..  289IFGMFGIVVMVIETELSWGLYSKDSMFSLALKCLISLSTIILLGLIIAYHT------------REAQLFVIDNGADDWRIAMTYERILYISLEMLVCAIHPIPGEYKFFWTARLAFSYTPSRAEADVDIILSIPMFLRLYLI--------ARVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISLWIIAAWTVRACERYHDQQDVTSNFLG------AMWLISITFLSIGYGDMVPHTYC-------GVCLLTGIMGAGCTALVVRKLELTKAEKHVHNFMMDTQLTKRIKNAAANVLRETWLIYKHTKLLKKI 592
10 -6.780[S] KOG1793 Uncharacterized conserved protein  ali follow..  229..................................................................................................................................................GIDIINDDDGTVSRLVERMKHAAKSDRNANIERKPAFQKI-KMLPEVKAIML--AGIVEVLIENGFMSALSE----LAPLPDKCLPALDIRITVLKLLHNP-------------RFWKLDRSTLKQSGLGAVMMLYKHPNETKENKGIANKLI--------------IYHLDTDYSTVSRQEREE 388

FFAS is supported by the NIH grant R01-GM087218-01
8 3 0 7 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.