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Query: gi|15923000|ref|NP_370534.1| hypothetical protein (SAV0010) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATHLSFRQGVQECIPTLLGYAGVGISFGIVASSQNFSILEIILLCLVIYAGAAQFIMCALFIAGTPISAIVLTVFIVNSRMFLLSMSLAPNFKTYGFWNRVGLGSLVTDETFGVAITPYLKGEAINDRWMHGLNITAYLFWAISCVAGALFGEYISNPQTLGLDFAITAMFIFLAIAQFESITKSRLRIYIVLIIAVIVMMLSLSMFMPSYLAILIAATISAALGVMMERLast
1 -61.000[E] COG1296 Predicted branched-chain amino acid permease (azaleucine resistance)  ali follow..  22  4.ENLKEIRGGIGETLTVGLGLIPLGLAFGLLMVQTGFAWWWTPIFSFVIYAGSMEFLAIGMVTAGIGPFSAAVAGFMVNFRHIFYGLTFPRHRIKSG-AGRAYSTYALTDESYAIVSA--RPPGDISGTRVLTVQILCQALWVIPGIIGALVGQVLPDDLK-GMDFALTALFVVLAWEAFKNNKDYSLPLFAVVLALVSGFVAPEQMLVIALTTYFLILLL.......... 219
2 -7.570[B] KOG3118 Disrupter of silencing SAS10  ali follow..  201..PRTELLKILEAKHPEFQLFLDLNEIKEKLKTYPSSQLLQAQCTALSTYISFLTFYFALLKDGEEDLKNHPIMVDLVRCKQTW------ESYCGLDEVLTPTSLEEDGKTIELHEKIASASDIGAS........................................................................................................ 327
3 -7.560[P] KOG4505 Na+/H+ antiporter  ali follow..  12  36................LFLGEATMATATGLIFGPYVAKLFVPT--DYITEELARVLLVVEVFAAGAELSMFVMLLPVMIFGWLVSTGFMYALIPRLSFLESLAIAACITDPVLASSIVGKGKFAR---------RVPGHLRNMLLAESGCNDG------------MAIPFLYLAIYLIIEKPARHAGRDWVCIIIL----------------YECTFGCVLGAIIGVIARK 228
4 -7.100[P] KOG3733 Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins)  ali follow..  11  435........................NSLFTLTSIFLGMGAL-VGVLRYFGFFSQYNILMLTLKRSAPNIMRFMTCAIVLYAGFLIAGWVISMKFRTLAESSEALFSLLNGDDMFATFYT--INDSNTVIKVFGTVYIYLFVSLFI---------------------YVVLSLFIAIIMDAYEVVKD.............................................. 578
5 -6.930[T] KOG2290 Rhomboid family proteins  ali follow..  12  617.........................FMRGYFHEEATLCSQVHCMDDV---CGLLPFLNPE---VPDQFYRLWLSLFLAGILHCLVSICF-----------QMTVLRDL-EKLAG---------------------HRIAIIYLLSGVTGNLASAFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPDNFAHISGFISGLFLSFAF.. 786
6 -6.830[S] KOG4790 Uncharacterized conserved protein  ali follow..  13  1............................................................MMYEYADVNMLLLETFLESAPQLVLQLYIMLQKNSAETLPCVSSVTSLMSLAWVLASHKLLRDSRDDKKSMSYRGAIIQVFWRLFTISSRVISFALSKWEEILFNMVVGIVYIFCWFNVKEGRTRYRMFAYYTIVLTENAALTFLWYFYRDPVPALCCVFISFVAGIAM.. 211
7 -6.830[P] KOG1418 Tandem pore domain K+ channel  ali follow..  266.........RYGNLACTNLGRV-ATIIYGLI----GIP------LMLFVLKIFGEHSIKWA-DEEQITTFPVKWALFIVFFFMVVCSLIVSFW-----------------EKWD---------------FLTAF----YFFFVSLSTIG--FGDVIPEHPRTACGNGLLEIKICYIS------------VMINGALKMSGDAVNFPRFLNTK................... 450
8 -6.760[P] KOG3386 Copper transporter  ali follow..  21  56........................................................................................................................................LLFSGLVINT-AGEMAGAFV---------FLLAMFYEGLKIARESLLRKSQVSITVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFL.. 174
9 -6.660[S] COG2119 Predicted membrane protein  ali follow..  12  51..............IPIIAAIFLATLANHALAAWLGVVVADYLSPDILKWVLVVSFLAMAGWILDGEESISTRGPFVASFIAFFMA---------------------IGDKTQIATSILGAQYADALSWVIVGTTLGMLLANVPVVLIGKLSADKMPLGL---IRKVTAGLFLLMALATA................................................... 198
10 -6.440[T] KOG4220 Muscarinic acetylcholine receptor  ali follow..  11  22....................................................LERHRLWEVITIAAVTAVVSLITIVGNV--VMISFKVNSQLKTVN----YLLSLACADLIIGIFSMNLYTTYILMGRWALGSLACDL--WLALDYV--ASNASVMNLLVISFD-----RYFSITRPLTYRAKRTPKRAGIMIGLAWLISFILWAQFLSEPTITFGTAIAAFYIPVSV.. 208

FFAS is supported by the NIH grant R01-GM087218-01
8 5 6 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.