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Query: gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKPKGDDSVTQLILPIRTYLast
1 -90.200[L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)  ali follow..  25  1.MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK--------VYEKGAISIPSKRFFQLVKELTEANLEISSSAGEMAQITSGSSCFRLLSMEKEDFPMLPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATIVGTDGKRLAKIDAEVTLDKSSGEYIIPIKAVEEIIKMCSDEGE-AAIFLDQDKIAVECDNTLLITKLLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNE-SSHSVKFSFLPGELTLTANCTKVGEGKVSMAV-NYSGELLEIAFNPFFFLDILKHSKDELVSLGISDSYNPGIIT--DSASGLFVIMPMRLH 364
2 -9.110[L] KOG1636 DNA polymerase delta processivity factor (proliferating cell nuclear antigen)  ali follow..  15  5................................................................................................................................................RLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEDRNLSMGMNLGNMSKMLKCAGNDDITIKADDGGDTVTFMFESADFEMKLMDIDSEHLG-IPDAEYHSIVRMPSNEFSRICKDLSSIGDT-----VVISVTKEGVKFSTAG-DIGTANIVLRQNTTVKEPVSLSFALRYMNSFTKATPSDTVTISLSSEL-PVVVE-AEMGYIRYYLAP.... 253
3 -8.610[DL] KOG2810 Checkpoint 9-1-1 complex, RAD9 component  ali follow..  13  2......................................................................................................................................KYTLEGSNAR-VIAKAVQSLSK-----VGKEMFIEIDQQSLQMRAINATQSAVGSISFKPPHSDFYCKISMKGCLAVFRNMNEVEYELNLLDNQTNLQVNLRCKLETTKEATISIIDDQNI-TDQMPNIIRGDHKLLTDISNNFNSSEEE-----LTLEANSGSVVAKNYIEGARVNDKFMRTQ---TKETVITFCIKEFRAFLLFAENASLTLEFDEAGMPFLLKIKKHGEI.......... 249
4 -4.720[S] COG4894 Uncharacterized conserved protein  ali follow..  1.........................................................................................................................................MEVLMKTFLVKQKFRLGGEREIAYQVEGSFFKI-PKTFTIYDAAGEQVSEISKEILTLLPRFEIQLRDGSSFVIRKKLTFWRDKYEFDNLGLRI--------------EGNIWDLNFKLLDDRDQLIAEIKKELFHLTSTYTVTVLEDAYADLVISL................................................................................... 150
5 -4.620[K] COG0195 Transcription elongation factor  ali follow..  12  2.......NSEFMDALTTLEKGISKEVIIEAIEAALISGYKRNF--QAQNVRVDVN---------------RENGSIRVFAR--KEVVEEVFDARLEISLDEAKGINPNYEVDDVVEIEVTPKDFGRIAAQTAKQVVT---QRVREAERGIIYADFIDREEDIMTGIVQRQDNRFIYV------DLGKVEALLPLSEQ-----MPNESYRHNDRI------KVEKTTKGPQIMISRTHPGLLKRLFELEVPEIYD------------------GTVELKSVAREAGDRSKISVHAENPEVDPVGACVGPKGSRVQTIVNELKGEKIDI---------------SEDPVEYVANALSPSKVVKVEEEKTTQVIVP.... 309
6 -4.410[I] KOG0016 Enoyl-CoA hydratase/isomerase  ali follow..  12  16............DMHTSVPRVKGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKKEDGFTQIVLSTRST-ALNTEVIKEIVNALNSAA-----ADDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFI-----QFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFL----------TGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQ................................................................................. 281
7 -4.330[O] COG4934 Predicted protease  ali follow..  10 1150.AVYTDSLSPYGGYVNYMWYSVDGMTPISFGQDGYAVAAASQTQIFGLNSS-SGLNTLYVYFNDTLGLTYETSMEFYFNA--TPSLMLSSPSYYEHGNFSVSYKDNLNPNLTILNYISYNGNIIASEPITTSSGVLQINGNDLPYGILNLTFTIETANGQTNETSITVMNLPADEYYPTVN---IAPVTGSSQTGSLNITFTYTGFDDTVILYVNGSSGNVITANVTGKNITEGKGS----SSLPAGNYTVTVLVISKDAKQSANFDLKAPVVPPVQSSIIIEYLVIGIVGGLI-------------VGSLAVVAVMRR.......................................................... 1458
8 -3.840[E] COG0404 Glycine cleavage system T protein (aminomethyltransferase)  ali follow..  12  30..............................................GEDMHAAVARECRAVREAVGLLDASTLGKIDIQGPDAREFLNRVDDGVTACLADNHFVMTTTTGGAARVLEWLEQTEWPELKVTDHYATLTLSGPNSRKLLAEVTDIDLDKDAFPFMT-----WKEGKVAGVPARVFRISF------TGELSYEVNVQADYAMGVLEALAEHGAKYGLTTETMHVLRAEKGFIIVGQDTDAS------VTPDDLNMGWAVGRSKPFSWIGWRGMCLREDRKQLVGLRPSNGHVTSSYMSASLGHMGQKVYAPLADGRFIEAEICSSVFYD......................................... 380
9 -3.840[P] COG3627 Uncharacterized enzyme of phosphonate metabolism  ali follow..  14  9.......................................................................................................................................................FAYLDEQTKR-------MIRRAILKAVAIPGYQVGGREMPMPYGWGTGGIQLTASVISDVLKVIDQGADDTTNAVSIRNFFKRVTGVNTTERTDDATVIQTRHRIPETTEDQIIIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYEDIARFGHIA--------TTYAYPVKVNGRYVMDPSPIPKFDNPKMDMMPAL---QLFGAGREKRIYAVPP.... 218
10 -3.800[T] KOG0229 Phosphatidylinositol-4-phosphate 5-kinase  ali follow..  10  504...FRNLRQMFKLDAAEYMMSICGDDGLTEISS---PGKSGSIFYLSHDDRFVIKTLKKSELQVLLRMHVGDHENTLITKFFGVHRITLKWGKKVRFVVMGNMFCTELKIHRRYDLKGSKIQEKTTLKDLDLAYEFHMDKLLREALFKQIYLDCSFLESLNILLGLHFRAPGQLNDILEPPNAMSDQESVSSVDVGLTQEHSIPPKGLLLVTHEPNSVNTAPGPHIRGSTLRAFSVGEQEVDLILPGT--------RLRVQLGVNMPAQAHHKLIEDKEESATIELFEVYDVVVYMGIIDILQEYNTKKKVEHTCKSLQYDPMTISVTYSKRFVNFLHKVFPEER................................ 859

FFAS is supported by the NIH grant R01-GM087218-01
8 2 9 2 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.