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anford Burnham Prebys Medical Discovery Institute
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Query: PF00543.20; C1DJ64_AZOVD/4-105; Nitrogen regulatory protein P-II, from PfamA30U

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VTAIIKPFKLDDVRESLSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIDVAIEDSQLDHVIEAITKAANTGKIGDGKIFVVNLEQAIRIRTGLast
1 -5.690 VFG044083(gi:15597454) (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]  ali follow..  18  82.........LGELDGALSDVRDLQLRITAPQDFVKWH--------SSVSAAFIPKVQVEMLADDQFSDLVGQRIDLAVRIGWPRDSGLHASKLCDFQQV... 173
2 -5.220 VFG013315(gi:16272596) (lgtF) beta-1,4-glucosyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]  ali follow..  17  32..IILDSGSTDNTKEIALSYGAKFYENSDWQGFGKQRQLAQQYVTSDYVL----WLDADERVTPKLQQAILSAVKNDRE....................... 104
3 -4.930 VFG004006(gi:16765904) (gogB) type III secretion system effector GogB, anti-inflammatory effector [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  20  423.......FVIDNLVDAISDIHGNSITAHELRWVYRNRHDDLVKQNVKFFLNYKPK............................................... 493
4 -4.700 VFG002375(gi:123443293) (wbcA) sugar epimerase [O-antigen (VF0392)] [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  18  5................ITELNISGCYLIESPIFSDERGKNNVIRGMHFQQYPDDHNKLVFCPEGEVLDVFLDIRKDSNTYGQ.................... 98
5 -4.580 VFG042457(gi:145510) (cfaC) colonisation factor antigen c, usher [Colonization factor antigen I fimbriae (CFA/I) (AI018)] [Escherichia coli str. E7473]  ali follow..  19  249..............NLLPLPDIDGIRTSPVTVMLTNFSRVEAFRNGVNELDTLPDLKLKIFENTQLVREEIIPFNKGRSSIGDMQWDIFVQ........... 357
6 -4.490 VFG042473(gi:15419714) (csaC) usher protein CsaC [coli surface antigen CS4 (AI022)] [Escherichia coli O25:H42 str. E11881A]  ali follow..  16  247..............NLLPLPDIDGIRTSPVTVMLTNFSRVEAFRNGVNELDTLPDLKLKIFENTQLVREEIIPFNKGRSSIGDMQWDVFIQ........... 355
7 -4.380 VFG042521(gi:33469480) (csdC) CS19 fimbrial usher CsdC [coli surface antigen CS19 (AI032)] [Escherichia coli O114:H- str. WS0115A]  ali follow..  18  253..............DLLPVPDIYGMRASPVTIMLTHFSRVEAYRNGISELDTLPDLKLKIFEQEQLVREEIVPFNKSGSSIGDTHWDVFVQ........... 361
8 -4.380 VFG042508(gi:46369886) (csbC) CS17 fimbriae outer membrane usher protein [coli surface antigen CS17 (AI030)] [Escherichia coli O8:H9 str. WS6788A]  ali follow..  18  253..............DLLPVPDIYGMRASPVTIMLTHFSRVEAYRNGISELDTLPDLKLKIFEQEQLVREEIVPFNKSGSSIGDTHWDVFVQ........... 361
9 -4.350 VFG016667(gi:49474963) (badA/vomp/brp) Surface protein/Bartonella adhesin BadA-like [BadA (SS156)] [Bartonella henselae str. Houston-1]  ali follow..  18 1644........SIENVRKEARQAAAIGLAVSNLRGSGLWRSQSAFAFGAGYTSE------------SGSIRSNLSITTSGGHWG-IGAGFNMTLN.......... 1726
10 -4.340 VFG002482(gi:53722526) (tagAB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]  ali follow..  22  3...IVKPETLALMRLSIGALACFALRAHAPDGPGDLAPEATLWQGAHAPLD-WPKPAGEFLVYGD..................................... 81

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.